Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPB entry

There is 1 chain in PDB entry 9KPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9KPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 22Right-handed 310
Helix 2
AA2
A
23 33Right-handed alpha
Helix 3
AA3
A
57 61Right-handed alpha
Helix 4
AA4
A
95 103Right-handed alpha
Helix 5
AA5
A
103 110Right-handed alpha
Helix 6
AA6
A
131 140Right-handed alpha
Helix 7
AA7
A
195 198Right-handed 310
Helix 8
AA8
A
199 209Right-handed alpha
Helix 9
AA9
A
244 248Right-handed alpha
Helix 10
AB1
A
280 293Right-handed alpha
Helix 11
AB2
A
313 327Right-handed alpha
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There are 3 sheets in PDB entry 9KPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
123 128anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
2 5anti-parallel
Strand 5
A
144 147parallel
Strand 6
A
155 156anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
41 46anti-parallel
Strand 5
A
229 234anti-parallel
Strand 6
A
237 243anti-parallel
Strand 7
A
186 189anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
304 310anti-parallel
Strand 4
A
297 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il