Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPJ entry

There is 1 chain in PDB entry 9KPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4VAL 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9KPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 48Right-handed alpha
Helix 2
AA2
A
53 68Right-handed alpha
Helix 3
AA3
A
101 105Right-handed 310
Helix 4
AA4
A
106 116Right-handed alpha
Helix 5
AA5
A
164 169Right-handed alpha
Helix 6
AA6
A
180 182Right-handed 310
Helix 7
AA7
A
189 193Right-handed 310
Helix 8
AA8
A
196 201Right-handed alpha
Helix 9
AA9
A
204 218Right-handed alpha
Helix 10
AB1
A
263 269Right-handed alpha
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There are 3 sheets in PDB entry 9KPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 99first strand
Strand 2
A
81 91anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
151 160anti-parallel
Strand 5
A
133 144anti-parallel
Strand 6
A
119 120anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 99first strand
Strand 2
A
81 91anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
151 160anti-parallel
Strand 5
A
133 144anti-parallel
Strand 6
A
124 127anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
175 178anti-parallel
Strand 3
A
254 262anti-parallel
Strand 4
A
233 242anti-parallel
Strand 5
A
220 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il