Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPL entry

There are 2 chains in PDB entry 9KPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 47PRO 180
E
 PHE 47PRO 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9KPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 56Right-handed alpha
Helix 2
AA2
A
74 85Right-handed alpha
Helix 3
AA3
A
94 103Right-handed alpha
Helix 4
AA4
A
141 145Right-handed 310
Helix 5
AA5
E
47 49Right-handed 310
Helix 6
AA6
E
50 56Right-handed alpha
Helix 7
AA7
E
74 85Right-handed alpha
Helix 8
AA8
E
94 103Right-handed alpha
Helix 9
AA9
E
141 145Right-handed 310
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There are 4 sheets in PDB entry 9KPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
171 177anti-parallel
Strand 4
A
108 114parallel
Strand 5
A
121 123anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
171 177anti-parallel
Strand 3
A
108 114parallel
Strand 4
A
149 155anti-parallel
Strand 5
A
158 164anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
64 68anti-parallel
Strand 3
E
171 177anti-parallel
Strand 4
E
108 114parallel
Strand 5
E
121 123anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 89first strand
Strand 2
E
171 177anti-parallel
Strand 3
E
108 114parallel
Strand 4
E
149 155anti-parallel
Strand 5
E
158 164anti-parallel
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