Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPP entry

There is 1 chain in PDB entry 9KPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5TRP 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9KPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 28Right-handed alpha
Helix 2
AA2
A
46 56Right-handed alpha
Helix 3
AA3
A
61 66Right-handed 310
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
84 88Right-handed 310
Helix 6
AA6
A
91 104Right-handed alpha
Helix 7
AA7
A
105 129Right-handed alpha
Helix 8
AA8
A
136 140Right-handed alpha
Helix 9
AA9
A
142 153Right-handed alpha
Helix 10
AB1
A
156 158Right-handed 310
Helix 11
AB2
A
159 172Right-handed alpha
Helix 12
AB3
A
177 200Right-handed alpha
Helix 13
AB4
A
206 217Right-handed alpha
Helix 14
AB5
A
222 255Right-handed alpha
Helix 15
AB6
A
256 264Right-handed alpha
Helix 16
AB7
A
267 279Right-handed alpha
Helix 17
AB8
A
310 315Right-handed alpha
Helix 18
AB9
A
341 345Right-handed 310
Helix 19
AC1
A
348 367Right-handed alpha
Helix 20
AC2
A
375 379Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 9KPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
307 309parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
289 290anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
394 396anti-parallel
Strand 3
A
371 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il