Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPQ entry

There are 2 chains in PDB entry 9KPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 5GLY 588
B
 MET 4GLY 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9KPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
19 42Right-handed alpha
Helix 4
AA4
A
44 50Right-handed alpha
Helix 5
AA5
A
51 62Right-handed alpha
Helix 6
AA6
A
77 84Right-handed alpha
Helix 7
AA7
A
87 92Right-handed alpha
Helix 8
AA8
A
93 99Right-handed 310
Helix 9
AA9
A
120 135Right-handed alpha
Helix 10
AB1
A
148 151Right-handed 310
Helix 11
AB2
A
152 163Right-handed alpha
Helix 12
AB3
A
186 197Right-handed alpha
Helix 13
AB4
A
204 209Right-handed alpha
Helix 14
AB5
A
221 233Right-handed alpha
Helix 15
AB6
A
251 257Right-handed alpha
Helix 16
AB7
A
257 262Right-handed alpha
Helix 17
AB8
A
282 298Right-handed alpha
Helix 18
AB9
A
308 313Right-handed 310
Helix 19
AC1
A
315 323Right-handed alpha
Helix 20
AC2
A
332 346Right-handed alpha
Helix 21
AC3
A
356 360Right-handed alpha
Helix 22
AC4
A
362 368Right-handed alpha
Helix 23
AC5
A
391 395Right-handed 310
Helix 24
AC6
A
398 404Right-handed alpha
Helix 25
AC7
A
416 430Right-handed alpha
Helix 26
AC8
A
478 494Right-handed alpha
Helix 27
AC9
A
509 516Right-handed alpha
Helix 28
AD1
A
534 543Right-handed alpha
Helix 29
AD2
A
564 572Right-handed alpha
Helix 30
AD3
A
575 588Right-handed alpha
Helix 31
AD4
B
4 9Right-handed 310
Helix 32
AD5
B
11 16Right-handed alpha
Helix 33
AD6
B
19 42Right-handed alpha
Helix 34
AD7
B
44 51Right-handed alpha
Helix 35
AD8
B
51 62Right-handed alpha
Helix 36
AD9
B
77 84Right-handed alpha
Helix 37
AE1
B
87 92Right-handed alpha
Helix 38
AE2
B
93 99Right-handed 310
Helix 39
AE3
B
120 135Right-handed alpha
Helix 40
AE4
B
148 151Right-handed 310
Helix 41
AE5
B
152 163Right-handed alpha
Helix 42
AE6
B
186 197Right-handed alpha
Helix 43
AE7
B
204 209Right-handed alpha
Helix 44
AE8
B
221 233Right-handed alpha
Helix 45
AE9
B
251 257Right-handed alpha
Helix 46
AF1
B
257 262Right-handed alpha
Helix 47
AF2
B
282 298Right-handed alpha
Helix 48
AF3
B
308 313Right-handed 310
Helix 49
AF4
B
315 323Right-handed alpha
Helix 50
AF5
B
332 346Right-handed alpha
Helix 51
AF6
B
356 360Right-handed alpha
Helix 52
AF7
B
362 369Right-handed alpha
Helix 53
AF8
B
391 395Right-handed 310
Helix 54
AF9
B
398 404Right-handed alpha
Helix 55
AG1
B
416 430Right-handed alpha
Helix 56
AG2
B
478 494Right-handed alpha
Helix 57
AG3
B
509 516Right-handed alpha
Helix 58
AG4
B
534 543Right-handed alpha
Helix 59
AG5
B
564 572Right-handed alpha
Helix 60
AG6
B
575 588Right-handed alpha
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There are 6 sheets in PDB entry 9KPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
141 146parallel
Strand 3
A
169 175parallel
Strand 4
A
238 244parallel
Strand 5
A
212 216parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
301 305parallel
Strand 3
A
349 355parallel
Strand 4
A
378 382parallel
Strand 5
A
435 438parallel
Strand 6
A
410 412parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
498 501anti-parallel
Strand 3
A
469 474parallel
Strand 4
A
520 530parallel
Strand 5
A
549 555parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 71first strand
Strand 2
B
141 146parallel
Strand 3
B
169 175parallel
Strand 4
B
238 244parallel
Strand 5
B
212 216parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
301 305parallel
Strand 3
B
349 355parallel
Strand 4
B
378 382parallel
Strand 5
B
435 438parallel
Strand 6
B
410 412parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 465first strand
Strand 2
B
498 501anti-parallel
Strand 3
B
469 474parallel
Strand 4
B
520 530parallel
Strand 5
B
549 555parallel
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