Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPS entry

There are 4 chains in PDB entry 9KPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 45VAL 637
B
 THR 28PHE 265
C
 GLU 55LEU 198
D
 ILE 34ASP 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9KPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 67Right-handed alpha
Helix 2
AA2
A
109 120Right-handed alpha
Helix 3
AA3
A
128 136Right-handed alpha
Helix 4
AA4
A
138 143Right-handed alpha
Helix 5
AA5
A
186 199Right-handed alpha
Helix 6
AA6
A
267 273Right-handed alpha
Helix 7
AA7
A
300 305Right-handed alpha
Helix 8
AA8
A
330 345Right-handed alpha
Helix 9
AA9
A
365 370Right-handed alpha
Helix 10
AB1
A
373 378Right-handed alpha
Helix 11
AB2
A
450 466Right-handed alpha
Helix 12
AB3
A
482 494Right-handed alpha
Helix 13
AB4
A
503 515Right-handed alpha
Helix 14
AB5
A
524 538Right-handed alpha
Helix 15
AB6
A
555 574Right-handed alpha
Helix 16
AB7
B
66 77Right-handed alpha
Helix 17
AB8
B
137 145Right-handed alpha
Helix 18
AB9
B
146 148Right-handed 310
Helix 19
AC1
B
166 171Right-handed alpha
Helix 20
AC2
B
172 174Right-handed 310
Helix 21
AC3
B
185 189Right-handed 310
Helix 22
AC4
B
200 205Right-handed alpha
Helix 23
AC5
B
241 246Right-handed alpha
Helix 24
AC6
B
258 265Right-handed alpha
Helix 25
AC7
C
59 64Right-handed alpha
Helix 26
AC8
C
64 73Right-handed alpha
Helix 27
AC9
C
88 93Right-handed alpha
Helix 28
AD1
C
101 113Right-handed alpha
Helix 29
AD2
C
115 120Right-handed alpha
Helix 30
AD3
C
125 137Right-handed alpha
Helix 31
AD4
C
138 167Right-handed alpha
Helix 32
AD5
C
173 180Right-handed alpha
Helix 33
AD6
C
182 192Right-handed alpha
Helix 34
AD7
C
193 198Right-handed alpha
Helix 35
AD8
D
65 74Right-handed alpha
Helix 36
AD9
D
75 80Right-handed alpha
Helix 37
AE1
D
80 85Right-handed alpha
Helix 38
AE2
D
94 114Right-handed alpha
Helix 39
AE3
D
116 121Right-handed alpha
Helix 40
AE4
D
128 133Right-handed alpha
Helix 41
AE5
D
142 153Right-handed alpha
Helix 42
AE6
D
158 166Right-handed alpha
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There are 8 sheets in PDB entry 9KPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
234 237parallel
Strand 3
A
221 229anti-parallel
Strand 4
A
214 218anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
78 81parallel
Strand 3
A
55 58parallel
Strand 4
A
243 245parallel
Strand 5
A
422 430parallel
Strand 6
A
411 415anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
614 619anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 290first strand
Strand 2
A
394 400anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
356 358anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
435 436parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
542 543parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 58first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
119 122parallel
Strand 4
B
96 99anti-parallel
Strand 5
B
102 105anti-parallel
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