Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPT entry

There are 4 chains in PDB entry 9KPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 45VAL 637
B
 THR 30ALA 266
C
 GLU 55LEU 198
D
 LEU 37ASP 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9KPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 75Right-handed alpha
Helix 2
AA2
A
85 93Right-handed 310
Helix 3
AA3
A
109 120Right-handed alpha
Helix 4
AA4
A
126 136Right-handed alpha
Helix 5
AA5
A
136 146Right-handed alpha
Helix 6
AA6
A
188 202Right-handed alpha
Helix 7
AA7
A
267 273Right-handed alpha
Helix 8
AA8
A
299 303Right-handed 310
Helix 9
AA9
A
332 340Right-handed alpha
Helix 10
AB1
A
340 345Right-handed alpha
Helix 11
AB2
A
365 370Right-handed alpha
Helix 12
AB3
A
372 378Right-handed alpha
Helix 13
AB4
A
449 456Right-handed alpha
Helix 14
AB5
A
457 466Right-handed alpha
Helix 15
AB6
A
488 494Right-handed alpha
Helix 16
AB7
A
503 515Right-handed alpha
Helix 17
AB8
A
524 537Right-handed alpha
Helix 18
AB9
A
554 576Right-handed alpha
Helix 19
AC1
B
66 77Right-handed alpha
Helix 20
AC2
B
138 146Right-handed alpha
Helix 21
AC3
B
170 174Right-handed 310
Helix 22
AC4
B
185 188Right-handed 310
Helix 23
AC5
B
189 195Right-handed alpha
Helix 24
AC6
B
201 213Right-handed alpha
Helix 25
AC7
B
222 226Right-handed 310
Helix 26
AC8
B
240 245Right-handed alpha
Helix 27
AC9
B
258 265Right-handed alpha
Helix 28
AD1
C
58 73Right-handed alpha
Helix 29
AD2
C
87 113Right-handed alpha
Helix 30
AD3
C
115 120Right-handed alpha
Helix 31
AD4
C
125 135Right-handed alpha
Helix 32
AD5
C
138 166Right-handed alpha
Helix 33
AD6
C
173 198Right-handed alpha
Helix 34
AD7
D
65 76Right-handed alpha
Helix 35
AD8
D
83 87Right-handed 310
Helix 36
AD9
D
95 121Right-handed alpha
Helix 37
AE1
D
128 135Right-handed alpha
Helix 38
AE2
D
141 144Right-handed 310
Helix 39
AE3
D
145 153Right-handed alpha
Helix 40
AE4
D
158 163Right-handed alpha
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There are 8 sheets in PDB entry 9KPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
235 239parallel
Strand 3
A
222 229anti-parallel
Strand 4
A
210 217anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
78 81parallel
Strand 3
A
55 58parallel
Strand 4
A
242 245parallel
Strand 5
A
422 430parallel
Strand 6
A
411 415anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
614 619anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
396 400anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
356 358anti-parallel
Strand 3
A
391 392anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
435 436parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
542 543parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 58first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
119 122parallel
Strand 4
B
96 99anti-parallel
Strand 5
B
102 105anti-parallel
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