Analysis of interatomic Contacts of Structural Units in PDB entry:
9KPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KPW entry

There are 3 chains in PDB entry 9KPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 471
B
 MET 1ASN 471
C
 MET 1PRO 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 9KPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 32Right-handed alpha
Helix 2
AA2
A
40 46Right-handed alpha
Helix 3
AA3
A
61 66Right-handed alpha
Helix 4
AA4
A
73 77Right-handed 310
Helix 5
AA5
A
79 104Right-handed alpha
Helix 6
AA6
A
117 125Right-handed alpha
Helix 7
AA7
A
136 149Right-handed alpha
Helix 8
AA8
A
175 190Right-handed alpha
Helix 9
AA9
A
200 205Right-handed alpha
Helix 10
AB1
A
205 215Right-handed alpha
Helix 11
AB2
A
225 230Right-handed 310
Helix 12
AB3
A
232 238Right-handed alpha
Helix 13
AB4
A
246 256Right-handed alpha
Helix 14
AB5
A
274 289Right-handed alpha
Helix 15
AB6
A
297 300Right-handed 310
Helix 16
AB7
A
306 311Right-handed alpha
Helix 17
AB8
A
332 338Right-handed alpha
Helix 18
AB9
A
350 361Right-handed alpha
Helix 19
AC1
A
372 382Right-handed alpha
Helix 20
AC2
A
408 421Right-handed alpha
Helix 21
AC3
A
423 441Right-handed alpha
Helix 22
AC4
A
448 471Right-handed alpha
Helix 23
AC5
B
14 32Right-handed alpha
Helix 24
AC6
B
40 46Right-handed alpha
Helix 25
AC7
B
61 66Right-handed alpha
Helix 26
AC8
B
73 77Right-handed 310
Helix 27
AC9
B
79 104Right-handed alpha
Helix 28
AD1
B
117 125Right-handed alpha
Helix 29
AD2
B
136 149Right-handed alpha
Helix 30
AD3
B
175 191Right-handed alpha
Helix 31
AD4
B
200 205Right-handed alpha
Helix 32
AD5
B
205 215Right-handed alpha
Helix 33
AD6
B
225 230Right-handed 310
Helix 34
AD7
B
232 238Right-handed alpha
Helix 35
AD8
B
246 256Right-handed alpha
Helix 36
AD9
B
274 289Right-handed alpha
Helix 37
AE1
B
297 300Right-handed 310
Helix 38
AE2
B
306 311Right-handed alpha
Helix 39
AE3
B
332 338Right-handed alpha
Helix 40
AE4
B
350 361Right-handed alpha
Helix 41
AE5
B
372 382Right-handed alpha
Helix 42
AE6
B
408 421Right-handed alpha
Helix 43
AE7
B
423 441Right-handed alpha
Helix 44
AE8
B
448 471Right-handed alpha
Helix 45
AE9
C
14 32Right-handed alpha
Helix 46
AF1
C
40 46Right-handed alpha
Helix 47
AF2
C
61 66Right-handed alpha
Helix 48
AF3
C
73 77Right-handed 310
Helix 49
AF4
C
79 104Right-handed alpha
Helix 50
AF5
C
117 126Right-handed alpha
Helix 51
AF6
C
136 149Right-handed alpha
Helix 52
AF7
C
175 190Right-handed alpha
Helix 53
AF8
C
200 205Right-handed alpha
Helix 54
AF9
C
205 215Right-handed alpha
Helix 55
AG1
C
225 230Right-handed 310
Helix 56
AG2
C
232 238Right-handed alpha
Helix 57
AG3
C
246 256Right-handed alpha
Helix 58
AG4
C
274 289Right-handed alpha
Helix 59
AG5
C
297 300Right-handed 310
Helix 60
AG6
C
306 311Right-handed alpha
Helix 61
AG7
C
332 338Right-handed alpha
Helix 62
AG8
C
350 360Right-handed alpha
Helix 63
AG9
C
372 382Right-handed alpha
Helix 64
AH1
C
408 421Right-handed alpha
Helix 65
AH2
C
423 441Right-handed alpha
Helix 66
AH3
C
448 470Right-handed alpha
Helix 67
AH4
D
14 31Right-handed alpha
Helix 68
AH5
D
40 46Right-handed alpha
Helix 69
AH6
D
61 66Right-handed alpha
Helix 70
AH7
D
73 77Right-handed 310
Helix 71
AH8
D
79 104Right-handed alpha
Helix 72
AH9
D
117 126Right-handed alpha
Helix 73
AI1
D
136 149Right-handed alpha
Helix 74
AI2
D
175 190Right-handed alpha
Helix 75
AI3
D
200 205Right-handed alpha
Helix 76
AI4
D
205 215Right-handed alpha
Helix 77
AI5
D
225 230Right-handed 310
Helix 78
AI6
D
232 238Right-handed alpha
Helix 79
AI7
D
246 257Right-handed alpha
Helix 80
AI8
D
274 289Right-handed alpha
Helix 81
AI9
D
297 300Right-handed 310
Helix 82
AJ1
D
306 311Right-handed alpha
Helix 83
AJ2
D
332 338Right-handed alpha
Helix 84
AJ3
D
350 361Right-handed alpha
Helix 85
AJ4
D
372 382Right-handed alpha
Helix 86
AJ5
D
408 421Right-handed alpha
Helix 87
AJ6
D
423 441Right-handed alpha
Helix 88
AJ7
D
448 471Right-handed alpha
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There are 12 sheets in PDB entry 9KPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
34 39parallel
Strand 3
A
6 10parallel
Strand 4
A
108 112parallel
Strand 5
A
129 132parallel
Strand 6
A
194 197parallel
Strand 7
A
220 222parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
169 170anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 327first strand
Strand 2
A
291 295parallel
Strand 3
A
262 266parallel
Strand 4
A
342 347parallel
Strand 5
A
364 366parallel
Strand 6
A
387 389parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
34 39parallel
Strand 3
B
6 10parallel
Strand 4
B
108 112parallel
Strand 5
B
129 132parallel
Strand 6
B
194 197parallel
Strand 7
B
220 222parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
169 170anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
291 295parallel
Strand 3
B
262 266parallel
Strand 4
B
342 347parallel
Strand 5
B
364 366parallel
Strand 6
B
387 389parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 57first strand
Strand 2
C
34 39parallel
Strand 3
C
6 10parallel
Strand 4
C
108 112parallel
Strand 5
C
129 132parallel
Strand 6
C
194 197parallel
Strand 7
C
220 222parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 160first strand
Strand 2
C
169 170anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 327first strand
Strand 2
C
291 295parallel
Strand 3
C
262 266parallel
Strand 4
C
342 347parallel
Strand 5
C
364 366parallel
Strand 6
C
387 389parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 57first strand
Strand 2
D
34 39parallel
Strand 3
D
6 10parallel
Strand 4
D
108 112parallel
Strand 5
D
129 132parallel
Strand 6
D
194 197parallel
Strand 7
D
220 222parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 160first strand
Strand 2
D
169 170anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
324 327first strand
Strand 2
D
291 295parallel
Strand 3
D
262 266parallel
Strand 4
D
342 347parallel
Strand 5
D
364 366parallel
Strand 6
D
387 389parallel
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