Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KQD entry

There are 6 chains in PDB entry 9KQD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 6	PRO 226
D	VAL 7	PRO 226
G	SER 6	PRO 226
I	SER 6	PRO 226
J	SER 6	VAL 227
K	SER 6	ARG 171

There are144 helices in PDB entry 9KQD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	17	30	Right-handed alpha
Helix 2	AA2	B	49	62	Right-handed alpha
Helix 3	AA3	B	73	82	Right-handed alpha
Helix 4	AA4	B	84	93	Right-handed alpha
Helix 5	AA5	B	96	116	Right-handed alpha
Helix 6	AA6	B	126	130	Right-handed 310
Helix 7	AA7	B	132	135	Right-handed 310
Helix 8	AA8	B	136	149	Right-handed alpha
Helix 9	AA9	B	164	175	Right-handed alpha
Helix 10	AB1	B	196	219	Right-handed alpha
Helix 11	AB2	D	17	30	Right-handed alpha
Helix 12	AB3	D	46	48	Right-handed 310
Helix 13	AB4	D	49	62	Right-handed alpha
Helix 14	AB5	D	73	82	Right-handed alpha
Helix 15	AB6	D	84	93	Right-handed alpha
Helix 16	AB7	D	96	116	Right-handed alpha
Helix 17	AB8	D	126	130	Right-handed 310
Helix 18	AB9	D	132	135	Right-handed 310
Helix 19	AC1	D	136	149	Right-handed alpha
Helix 20	AC2	D	164	175	Right-handed alpha
Helix 21	AC3	D	196	219	Right-handed alpha
Helix 22	AC4	G	17	30	Right-handed alpha
Helix 23	AC5	G	46	48	Right-handed 310
Helix 24	AC6	G	49	62	Right-handed alpha
Helix 25	AC7	G	73	82	Right-handed alpha
Helix 26	AC8	G	84	93	Right-handed alpha
Helix 27	AC9	G	96	116	Right-handed alpha
Helix 28	AD1	G	126	130	Right-handed 310
Helix 29	AD2	G	132	135	Right-handed 310
Helix 30	AD3	G	136	149	Right-handed alpha
Helix 31	AD4	G	164	175	Right-handed alpha
Helix 32	AD5	G	196	219	Right-handed alpha
Helix 33	AD6	I	17	30	Right-handed alpha
Helix 34	AD7	I	49	62	Right-handed alpha
Helix 35	AD8	I	73	82	Right-handed alpha
Helix 36	AD9	I	84	93	Right-handed alpha
Helix 37	AE1	I	96	116	Right-handed alpha
Helix 38	AE2	I	126	130	Right-handed 310
Helix 39	AE3	I	132	135	Right-handed 310
Helix 40	AE4	I	136	149	Right-handed alpha
Helix 41	AE5	I	164	175	Right-handed alpha
Helix 42	AE6	I	196	219	Right-handed alpha
Helix 43	AE7	J	17	30	Right-handed alpha
Helix 44	AE8	J	49	62	Right-handed alpha
Helix 45	AE9	J	73	82	Right-handed alpha
Helix 46	AF1	J	84	93	Right-handed alpha
Helix 47	AF2	J	96	116	Right-handed alpha
Helix 48	AF3	J	126	130	Right-handed 310
Helix 49	AF4	J	132	135	Right-handed 310
Helix 50	AF5	J	136	149	Right-handed alpha
Helix 51	AF6	J	164	175	Right-handed alpha
Helix 52	AF7	J	196	219	Right-handed alpha
Helix 53	AF8	K	17	30	Right-handed alpha
Helix 54	AF9	K	46	48	Right-handed 310
Helix 55	AG1	K	49	62	Right-handed alpha
Helix 56	AG2	K	73	82	Right-handed alpha
Helix 57	AG3	K	84	93	Right-handed alpha
Helix 58	AG4	K	96	116	Right-handed alpha
Helix 59	AG5	K	126	130	Right-handed 310
Helix 60	AG6	K	132	135	Right-handed 310
Helix 61	AG7	K	136	149	Right-handed alpha
Helix 62	AG8	K	164	175	Right-handed alpha
Helix 63	AG9	K	196	219	Right-handed alpha
Helix 64	AH1	M	17	30	Right-handed alpha
Helix 65	AH2	M	49	62	Right-handed alpha
Helix 66	AH3	M	73	82	Right-handed alpha
Helix 67	AH4	M	84	93	Right-handed alpha
Helix 68	AH5	M	96	116	Right-handed alpha
Helix 69	AH6	M	132	135	Right-handed 310
Helix 70	AH7	M	136	149	Right-handed alpha
Helix 71	AH8	M	164	175	Right-handed alpha
Helix 72	AH9	M	196	219	Right-handed alpha
Helix 73	AI1	A	17	30	Right-handed alpha
Helix 74	AI2	A	49	62	Right-handed alpha
Helix 75	AI3	A	73	82	Right-handed alpha
Helix 76	AI4	A	84	93	Right-handed alpha
Helix 77	AI5	A	96	116	Right-handed alpha
Helix 78	AI6	A	126	130	Right-handed 310
Helix 79	AI7	A	132	135	Right-handed 310
Helix 80	AI8	A	136	149	Right-handed alpha
Helix 81	AI9	A	164	175	Right-handed alpha
Helix 82	AJ1	A	196	219	Right-handed alpha
Helix 83	AJ2	C	17	30	Right-handed alpha
Helix 84	AJ3	C	46	48	Right-handed 310
Helix 85	AJ4	C	49	62	Right-handed alpha
Helix 86	AJ5	C	73	82	Right-handed alpha
Helix 87	AJ6	C	84	93	Right-handed alpha
Helix 88	AJ7	C	96	116	Right-handed alpha
Helix 89	AJ8	C	126	130	Right-handed 310
Helix 90	AJ9	C	132	135	Right-handed 310
Helix 91	AK1	C	136	149	Right-handed alpha
Helix 92	AK2	C	164	175	Right-handed alpha
Helix 93	AK3	C	196	219	Right-handed alpha
Helix 94	AK4	E	17	30	Right-handed alpha
Helix 95	AK5	E	46	48	Right-handed 310
Helix 96	AK6	E	49	62	Right-handed alpha
Helix 97	AK7	E	73	82	Right-handed alpha
Helix 98	AK8	E	84	93	Right-handed alpha
Helix 99	AK9	E	96	116	Right-handed alpha
Helix 100	AL1	E	126	130	Right-handed 310
Helix 101	AL2	E	132	135	Right-handed 310
Helix 102	AL3	E	136	149	Right-handed alpha
Helix 103	AL4	E	164	175	Right-handed alpha
Helix 104	AL5	E	196	219	Right-handed alpha
Helix 105	AL6	F	17	30	Right-handed alpha
Helix 106	AL7	F	49	62	Right-handed alpha
Helix 107	AL8	F	73	82	Right-handed alpha
Helix 108	AL9	F	84	93	Right-handed alpha
Helix 109	AM1	F	96	116	Right-handed alpha
Helix 110	AM2	F	126	130	Right-handed 310
Helix 111	AM3	F	132	135	Right-handed 310
Helix 112	AM4	F	136	149	Right-handed alpha
Helix 113	AM5	F	164	175	Right-handed alpha
Helix 114	AM6	F	196	219	Right-handed alpha
Helix 115	AM7	H	17	30	Right-handed alpha
Helix 116	AM8	H	49	62	Right-handed alpha
Helix 117	AM9	H	73	82	Right-handed alpha
Helix 118	AN1	H	84	93	Right-handed alpha
Helix 119	AN2	H	96	116	Right-handed alpha
Helix 120	AN3	H	126	130	Right-handed 310
Helix 121	AN4	H	132	135	Right-handed 310
Helix 122	AN5	H	136	149	Right-handed alpha
Helix 123	AN6	H	164	175	Right-handed alpha
Helix 124	AN7	H	196	219	Right-handed alpha
Helix 125	AN8	L	17	30	Right-handed alpha
Helix 126	AN9	L	49	62	Right-handed alpha
Helix 127	AO1	L	73	82	Right-handed alpha
Helix 128	AO2	L	84	93	Right-handed alpha
Helix 129	AO3	L	96	116	Right-handed alpha
Helix 130	AO4	L	132	135	Right-handed 310
Helix 131	AO5	L	136	149	Right-handed alpha
Helix 132	AO6	L	164	175	Right-handed alpha
Helix 133	AO7	L	196	219	Right-handed alpha
Helix 134	AO8	N	17	30	Right-handed alpha
Helix 135	AO9	N	46	48	Right-handed 310
Helix 136	AP1	N	49	62	Right-handed alpha
Helix 137	AP2	N	73	82	Right-handed alpha
Helix 138	AP3	N	84	93	Right-handed alpha
Helix 139	AP4	N	96	116	Right-handed alpha
Helix 140	AP5	N	126	130	Right-handed 310
Helix 141	AP6	N	132	135	Right-handed 310
Helix 142	AP7	N	136	149	Right-handed alpha
Helix 143	AP8	N	164	175	Right-handed alpha
Helix 144	AP9	N	196	219	Right-handed alpha

There are 28 sheets in PDB entry 9KQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	72	first strand
Strand 2	B	34	40	parallel
Strand 3	B	10	13	parallel
Strand 4	B	120	122	parallel
Strand 5	B	153	155	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	185	186	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	72	first strand
Strand 2	D	34	40	parallel
Strand 3	D	10	13	parallel
Strand 4	D	120	122	parallel
Strand 5	D	153	155	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	185	186	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	72	first strand
Strand 2	G	34	40	parallel
Strand 3	G	10	13	parallel
Strand 4	G	120	122	parallel
Strand 5	G	153	155	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	G	185	186	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	72	first strand
Strand 2	I	34	40	parallel
Strand 3	I	10	13	parallel
Strand 4	I	120	122	parallel
Strand 5	I	153	155	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	45	first strand
Strand 2	I	185	186	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	72	first strand
Strand 2	J	34	40	parallel
Strand 3	J	10	13	parallel
Strand 4	J	120	122	parallel
Strand 5	J	153	155	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	44	45	first strand
Strand 2	J	185	186	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	72	first strand
Strand 2	K	34	40	parallel
Strand 3	K	10	13	parallel
Strand 4	K	120	122	parallel
Strand 5	K	153	155	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	45	first strand
Strand 2	K	185	186	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	65	72	first strand
Strand 2	M	34	40	parallel
Strand 3	M	10	13	parallel
Strand 4	M	120	122	parallel
Strand 5	M	153	155	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	44	45	first strand
Strand 2	M	185	186	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	72	first strand
Strand 2	A	34	40	parallel
Strand 3	A	10	13	parallel
Strand 4	A	120	122	parallel
Strand 5	A	153	155	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	185	186	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	72	first strand
Strand 2	C	34	40	parallel
Strand 3	C	10	13	parallel
Strand 4	C	120	122	parallel
Strand 5	C	153	155	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	185	186	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	72	first strand
Strand 2	E	34	40	parallel
Strand 3	E	10	13	parallel
Strand 4	E	120	122	parallel
Strand 5	E	153	155	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	185	186	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	72	first strand
Strand 2	F	34	40	parallel
Strand 3	F	10	13	parallel
Strand 4	F	120	122	parallel
Strand 5	F	153	155	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	185	186	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	72	first strand
Strand 2	H	34	40	parallel
Strand 3	H	10	13	parallel
Strand 4	H	120	122	parallel
Strand 5	H	153	155	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	45	first strand
Strand 2	H	185	186	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	72	first strand
Strand 2	L	34	40	parallel
Strand 3	L	10	13	parallel
Strand 4	L	120	122	parallel
Strand 5	L	153	155	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	45	first strand
Strand 2	L	185	186	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	65	72	first strand
Strand 2	N	34	40	parallel
Strand 3	N	10	13	parallel
Strand 4	N	120	122	parallel
Strand 5	N	153	155	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	44	45	first strand
Strand 2	N	185	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KQD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQD