Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KQG entry

There are 4 chains in PDB entry 9KQG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 74	LEU 496
B	ILE 74	LYS 495
C	GLY 12	ALA 437
D	ASN 5	ALA 437

There are 57 helices in PDB entry 9KQG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	84	Right-handed alpha
Helix 2	AA2	A	105	117	Right-handed alpha
Helix 3	AA3	A	120	133	Right-handed alpha
Helix 4	AA4	A	154	178	Right-handed alpha
Helix 5	AA5	A	180	182	Right-handed 310
Helix 6	AA6	A	199	209	Right-handed alpha
Helix 7	AA7	A	225	239	Right-handed alpha
Helix 8	AA8	A	254	258	Right-handed 310
Helix 9	AA9	A	267	273	Right-handed alpha
Helix 10	AB1	A	286	290	Right-handed 310
Helix 11	AB2	A	307	313	Right-handed alpha
Helix 12	AB3	A	331	352	Right-handed alpha
Helix 13	AB4	A	380	384	Right-handed 310
Helix 14	AB5	A	394	405	Right-handed alpha
Helix 15	AB6	A	412	423	Right-handed alpha
Helix 16	AB7	A	425	427	Right-handed 310
Helix 17	AB8	A	428	440	Right-handed alpha
Helix 18	AB9	B	75	81	Right-handed alpha
Helix 19	AC1	B	105	117	Right-handed alpha
Helix 20	AC2	B	120	133	Right-handed alpha
Helix 21	AC3	B	144	148	Right-handed 310
Helix 22	AC4	B	154	178	Right-handed alpha
Helix 23	AC5	B	180	184	Right-handed 310
Helix 24	AC6	B	199	209	Right-handed alpha
Helix 25	AC7	B	225	241	Right-handed alpha
Helix 26	AC8	B	263	266	Right-handed 310
Helix 27	AC9	B	267	273	Right-handed alpha
Helix 28	AD1	B	285	289	Right-handed 310
Helix 29	AD2	B	307	312	Right-handed alpha
Helix 30	AD3	B	331	347	Right-handed alpha
Helix 31	AD4	B	347	352	Right-handed alpha
Helix 32	AD5	B	394	406	Right-handed alpha
Helix 33	AD6	B	413	423	Right-handed alpha
Helix 34	AD7	B	425	427	Right-handed 310
Helix 35	AD8	B	428	440	Right-handed alpha
Helix 36	AD9	C	32	38	Right-handed alpha
Helix 37	AE1	C	58	73	Right-handed alpha
Helix 38	AE2	C	74	78	Right-handed 310
Helix 39	AE3	C	111	118	Right-handed alpha
Helix 40	AE4	C	136	140	Right-handed 310
Helix 41	AE5	C	167	184	Right-handed alpha
Helix 42	AE6	C	244	255	Right-handed alpha
Helix 43	AE7	C	268	282	Right-handed alpha
Helix 44	AE8	C	421	434	Right-handed alpha
Helix 45	AE9	D	5	9	Right-handed 310
Helix 46	AF1	D	32	38	Right-handed alpha
Helix 47	AF2	D	51	55	Right-handed 310
Helix 48	AF3	D	58	73	Right-handed alpha
Helix 49	AF4	D	111	118	Right-handed alpha
Helix 50	AF5	D	123	127	Right-handed 310
Helix 51	AF6	D	136	140	Right-handed 310
Helix 52	AF7	D	167	184	Right-handed alpha
Helix 53	AF8	D	244	252	Right-handed alpha
Helix 54	AF9	D	268	281	Right-handed alpha
Helix 55	AG1	D	330	335	Right-handed alpha
Helix 56	AG2	D	367	371	Right-handed 310
Helix 57	AG3	D	419	435	Right-handed alpha

There are 14 sheets in PDB entry 9KQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	219	first strand
Strand 2	A	184	190	parallel
Strand 3	A	245	251	parallel
Strand 4	A	277	283	anti-parallel
Strand 5	A	89	95	anti-parallel
Strand 6	A	294	303	anti-parallel
Strand 7	A	459	467	anti-parallel
Strand 8	A	448	454	anti-parallel
Strand 9	A	387	390	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	C	14	18	anti-parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	143	150	parallel
Strand 5	C	155	162	anti-parallel
Strand 6	C	42	49	anti-parallel
Strand 7	C	381	386	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	318	first strand
Strand 2	A	324	328	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	219	first strand
Strand 2	B	186	190	parallel
Strand 3	B	245	251	parallel
Strand 4	B	277	283	anti-parallel
Strand 5	B	88	95	anti-parallel
Strand 6	B	294	303	anti-parallel
Strand 7	B	459	467	anti-parallel
Strand 8	B	448	455	anti-parallel
Strand 9	B	387	390	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	318	first strand
Strand 2	B	324	328	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	92	95	anti-parallel
Strand 3	C	79	81	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	350	352	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	243	first strand
Strand 2	C	412	418	anti-parallel
Strand 3	C	393	397	anti-parallel
Strand 4	C	362	364	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	296	first strand
Strand 2	C	311	313	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	18	first strand
Strand 2	D	100	107	anti-parallel
Strand 3	D	143	150	parallel
Strand 4	D	155	162	anti-parallel
Strand 5	D	42	49	anti-parallel
Strand 6	D	380	386	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	92	94	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	350	352	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	243	first strand
Strand 2	D	412	418	anti-parallel
Strand 3	D	393	398	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	295	first strand
Strand 2	D	312	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KQG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQG