Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KQH entry

There are 2 chains in PDB entry 9KQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LYS 748
B
 T 1 T 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9KQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 17Right-handed alpha
Helix 2
AA2
A
32 46Right-handed alpha
Helix 3
AA3
A
95 99Right-handed 310
Helix 4
AA4
A
104 122Right-handed alpha
Helix 5
AA5
A
150 184Right-handed alpha
Helix 6
AA6
A
195 210Right-handed alpha
Helix 7
AA7
A
222 237Right-handed alpha
Helix 8
AA8
A
249 251Right-handed 310
Helix 9
AA9
A
252 266Right-handed alpha
Helix 10
AB1
A
277 282Right-handed alpha
Helix 11
AB2
A
299 315Right-handed alpha
Helix 12
AB3
A
319 331Right-handed alpha
Helix 13
AB4
A
333 342Right-handed alpha
Helix 14
AB5
A
352 357Right-handed alpha
Helix 15
AB6
A
362 367Right-handed alpha
Helix 16
AB7
A
382 391Right-handed alpha
Helix 17
AB8
A
397 405Right-handed alpha
Helix 18
AB9
A
410 432Right-handed alpha
Helix 19
AC1
A
443 464Right-handed alpha
Helix 20
AC2
A
469 488Right-handed alpha
Helix 21
AC3
A
514 523Right-handed alpha
Helix 22
AC4
A
537 545Right-handed alpha
Helix 23
AC5
A
574 576Right-handed 310
Helix 24
AC6
A
577 595Right-handed alpha
Helix 25
AC7
A
605 615Right-handed alpha
Helix 26
AC8
A
628 638Right-handed alpha
Helix 27
AC9
A
680 692Right-handed alpha
Helix 28
AD1
A
696 702Right-handed alpha
Helix 29
AD2
A
702 715Right-handed alpha
Helix 30
AD3
A
732 736Right-handed 310
Helix 31
AD4
A
738 743Right-handed alpha
Helix 32
AD5
A
744 748Right-handed 310
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There are 5 sheets in PDB entry 9KQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
66 80parallel
Strand 3
A
52 63anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
66 80parallel
Strand 3
A
83 91anti-parallel
Strand 4
A
126 134parallel
Strand 5
A
141 149anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
272 274parallel
Strand 3
A
347 351parallel
Strand 4
A
242 247parallel
Strand 5
A
373 378parallel
Strand 6
A
527 532parallel
Strand 7
A
212 217parallel
Strand 8
A
550 555parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 396first strand
Strand 2
A
504 511anti-parallel
Strand 3
A
494 501anti-parallel
Strand 4
A
436 439anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 569first strand
Strand 2
A
725 730parallel
Strand 3
A
668 671parallel
Strand 4
A
599 603parallel
Strand 5
A
646 650parallel
Strand 6
A
621 622parallel
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