Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KQP entry

There are 24 chains in PDB entry 9KQP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	GLY 751
B	ALA 2	PHE 733
C	SER 2	TYR 81
D	TRP 50	VAL 192
E	ARG 12	VAL 71
F	ASP 81	ARG 245
G	LEU 36	PHE 138
H	SER 43	ILE 133
I	MET 1	GLU 33
J	MET 1	PHE 39
K	ILE 50	ALA 130
M	MET 1	SER 31
a	ALA 34	LEU 228
3	ALA 39	PHE 241
7	ASP 44	PHE 257
8	LYS 34	PRO 255
9	ALA 34	ILE 217
L	GLN 53	SER 210
O	LEU 57	TYR 141
b	GLY 35	PRO 226
2	PRO 43	LEU 257
4	ARG 38	ARG 243
5	GLY 43	HIS 273
6	ARG 39	PRO 272

There are201 helices in PDB entry 9KQP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	46	55	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	65	98	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	155	183	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	204	Right-handed alpha
Helix 11	AB2	A	205	220	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	233	237	Right-handed 310
Helix 14	AB5	A	239	246	Right-handed alpha
Helix 15	AB6	A	246	254	Right-handed alpha
Helix 16	AB7	A	255	260	Right-handed 310
Helix 17	AB8	A	261	266	Right-handed alpha
Helix 18	AB9	A	268	275	Right-handed 310
Helix 19	AC1	A	290	309	Right-handed alpha
Helix 20	AC2	A	321	329	Right-handed alpha
Helix 21	AC3	A	340	348	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	416	Right-handed alpha
Helix 24	AC6	A	418	422	Right-handed 310
Helix 25	AC7	A	425	432	Right-handed alpha
Helix 26	AC8	A	433	465	Right-handed alpha
Helix 27	AC9	A	467	471	Right-handed 310
Helix 28	AD1	A	481	493	Right-handed alpha
Helix 29	AD2	A	507	511	Right-handed 310
Helix 30	AD3	A	529	556	Right-handed alpha
Helix 31	AD4	A	565	570	Right-handed alpha
Helix 32	AD5	A	587	618	Right-handed alpha
Helix 33	AD6	A	634	639	Right-handed alpha
Helix 34	AD7	A	641	649	Right-handed alpha
Helix 35	AD8	A	649	654	Right-handed alpha
Helix 36	AD9	A	654	659	Right-handed alpha
Helix 37	AE1	A	665	688	Right-handed alpha
Helix 38	AE2	A	689	707	Right-handed alpha
Helix 39	AE3	A	719	751	Right-handed alpha
Helix 40	AE4	B	9	14	Right-handed alpha
Helix 41	AE5	B	18	27	Right-handed alpha
Helix 42	AE6	B	30	34	Right-handed 310
Helix 43	AE7	B	38	72	Right-handed alpha
Helix 44	AE8	B	73	80	Right-handed alpha
Helix 45	AE9	B	97	105	Right-handed alpha
Helix 46	AF1	B	119	127	Right-handed alpha
Helix 47	AF2	B	131	156	Right-handed alpha
Helix 48	AF3	B	157	162	Right-handed 310
Helix 49	AF4	B	164	169	Right-handed alpha
Helix 50	AF5	B	170	181	Right-handed alpha
Helix 51	AF6	B	183	197	Right-handed alpha
Helix 52	AF7	B	197	203	Right-handed alpha
Helix 53	AF8	B	222	228	Right-handed alpha
Helix 54	AF9	B	229	235	Right-handed 310
Helix 55	AG1	B	269	288	Right-handed alpha
Helix 56	AG2	B	300	308	Right-handed alpha
Helix 57	AG3	B	321	329	Right-handed alpha
Helix 58	AG4	B	329	355	Right-handed alpha
Helix 59	AG5	B	364	397	Right-handed alpha
Helix 60	AG6	B	406	414	Right-handed alpha
Helix 61	AG7	B	414	446	Right-handed alpha
Helix 62	AG8	B	448	452	Right-handed 310
Helix 63	AG9	B	457	467	Right-handed alpha
Helix 64	AH1	B	476	480	Right-handed 310
Helix 65	AH2	B	483	490	Right-handed alpha
Helix 66	AH3	B	493	502	Right-handed alpha
Helix 67	AH4	B	513	540	Right-handed alpha
Helix 68	AH5	B	549	554	Right-handed 310
Helix 69	AH6	B	571	603	Right-handed alpha
Helix 70	AH7	B	606	613	Right-handed alpha
Helix 71	AH8	B	615	628	Right-handed alpha
Helix 72	AH9	B	628	633	Right-handed alpha
Helix 73	AI1	B	643	666	Right-handed alpha
Helix 74	AI2	B	667	685	Right-handed alpha
Helix 75	AI3	B	701	733	Right-handed alpha
Helix 76	AI4	C	15	21	Right-handed alpha
Helix 77	AI5	C	44	48	Right-handed 310
Helix 78	AI6	C	52	58	Right-handed alpha
Helix 79	AI7	D	73	78	Right-handed alpha
Helix 80	AI8	D	114	129	Right-handed alpha
Helix 81	AI9	D	171	175	Right-handed 310
Helix 82	AJ1	D	177	182	Right-handed 310
Helix 83	AJ2	D	188	192	Right-handed 310
Helix 84	AJ3	E	64	66	Right-handed 310
Helix 85	AJ4	F	81	85	Right-handed 310
Helix 86	AJ5	F	91	110	Right-handed alpha
Helix 87	AJ6	F	116	139	Right-handed alpha
Helix 88	AJ7	F	154	161	Right-handed alpha
Helix 89	AJ8	F	167	194	Right-handed alpha
Helix 90	AJ9	F	199	204	Right-handed alpha
Helix 91	AK1	F	206	217	Right-handed alpha
Helix 92	AK2	F	219	231	Right-handed alpha
Helix 93	AK3	F	236	240	Right-handed 310
Helix 94	AK4	G	37	57	Right-handed alpha
Helix 95	AK5	G	58	70	Right-handed alpha
Helix 96	AK6	G	79	83	Right-handed alpha
Helix 97	AK7	G	84	88	Right-handed 310
Helix 98	AK8	G	90	94	Right-handed 310
Helix 99	AK9	G	103	130	Right-handed alpha
Helix 100	AL1	H	50	55	Right-handed alpha
Helix 101	AL2	H	70	81	Right-handed alpha
Helix 102	AL3	H	82	85	Right-handed 310
Helix 103	AL4	H	86	108	Right-handed alpha
Helix 104	AL5	H	108	113	Right-handed alpha
Helix 105	AL6	H	115	120	Right-handed alpha
Helix 106	AL7	I	5	16	Right-handed alpha
Helix 107	AL8	I	16	31	Right-handed alpha
Helix 108	AL9	J	2	9	Right-handed alpha
Helix 109	AM1	J	10	33	Right-handed alpha
Helix 110	AM2	K	52	71	Right-handed alpha
Helix 111	AM3	K	103	129	Right-handed alpha
Helix 112	AM4	M	4	31	Right-handed alpha
Helix 113	AM5	a	44	48	Right-handed 310
Helix 114	AM6	a	60	63	Right-handed 310
Helix 115	AM7	a	64	95	Right-handed alpha
Helix 116	AM8	a	105	110	Right-handed alpha
Helix 117	AM9	a	123	144	Right-handed alpha
Helix 118	AN1	a	155	159	Right-handed 310
Helix 119	AN2	a	162	165	Right-handed 310
Helix 120	AN3	a	166	199	Right-handed alpha
Helix 121	AN4	a	201	212	Right-handed alpha
Helix 122	AN5	3	63	85	Right-handed alpha
Helix 123	AN6	3	86	94	Right-handed alpha
Helix 124	AN7	3	105	109	Right-handed 310
Helix 125	AN8	3	112	116	Right-handed 310
Helix 126	AN9	3	124	149	Right-handed alpha
Helix 127	AO1	3	151	155	Right-handed 310
Helix 128	AO2	3	160	165	Right-handed 310
Helix 129	AO3	3	175	180	Right-handed alpha
Helix 130	AO4	3	188	218	Right-handed alpha
Helix 131	AO5	3	220	231	Right-handed alpha
Helix 132	AO6	3	236	241	Right-handed alpha
Helix 133	AO7	7	76	110	Right-handed alpha
Helix 134	AO8	7	120	129	Right-handed alpha
Helix 135	AO9	7	133	158	Right-handed alpha
Helix 136	AP1	7	160	164	Right-handed 310
Helix 137	AP2	7	171	175	Right-handed 310
Helix 138	AP3	7	183	188	Right-handed alpha
Helix 139	AP4	7	196	229	Right-handed alpha
Helix 140	AP5	7	231	242	Right-handed alpha
Helix 141	AP6	7	247	251	Right-handed 310
Helix 142	AP7	8	45	49	Right-handed 310
Helix 143	AP8	8	65	99	Right-handed alpha
Helix 144	AP9	8	109	118	Right-handed alpha
Helix 145	AQ1	8	121	146	Right-handed alpha
Helix 146	AQ2	8	159	164	Right-handed 310
Helix 147	AQ3	8	173	177	Right-handed 310
Helix 148	AQ4	8	180	184	Right-handed 310
Helix 149	AQ5	8	186	216	Right-handed alpha
Helix 150	AQ6	8	218	229	Right-handed alpha
Helix 151	AQ7	8	234	238	Right-handed 310
Helix 152	AQ8	9	66	97	Right-handed alpha
Helix 153	AQ9	9	102	106	Right-handed 310
Helix 154	AR1	9	114	141	Right-handed alpha
Helix 155	AR2	9	158	186	Right-handed alpha
Helix 156	AR3	9	189	200	Right-handed alpha
Helix 157	AR4	9	205	212	Right-handed alpha
Helix 158	AR5	9	212	217	Right-handed alpha
Helix 159	AR6	L	60	62	Right-handed 310
Helix 160	AR7	L	70	75	Right-handed alpha
Helix 161	AR8	L	75	84	Right-handed alpha
Helix 162	AR9	L	85	89	Right-handed 310
Helix 163	AS1	L	93	117	Right-handed alpha
Helix 164	AS2	L	124	153	Right-handed alpha
Helix 165	AS3	L	177	206	Right-handed alpha
Helix 166	AS4	O	67	76	Right-handed alpha
Helix 167	AS5	O	86	99	Right-handed alpha
Helix 168	AS6	O	111	139	Right-handed alpha
Helix 169	AS7	b	64	84	Right-handed alpha
Helix 170	AS8	b	137	143	Right-handed alpha
Helix 171	AS9	b	172	199	Right-handed alpha
Helix 172	AT1	b	203	212	Right-handed alpha
Helix 173	AT2	2	93	119	Right-handed alpha
Helix 174	AT3	2	126	130	Right-handed 310
Helix 175	AT4	2	138	162	Right-handed alpha
Helix 176	AT5	2	180	208	Right-handed alpha
Helix 177	AT6	2	211	222	Right-handed alpha
Helix 178	AT7	2	227	231	Right-handed 310
Helix 179	AT8	2	233	257	Right-handed alpha
Helix 180	AT9	4	69	96	Right-handed alpha
Helix 181	AU1	4	108	112	Right-handed 310
Helix 182	AU2	4	113	120	Right-handed 310
Helix 183	AU3	4	125	150	Right-handed alpha
Helix 184	AU4	4	175	179	Right-handed 310
Helix 185	AU5	4	191	215	Right-handed alpha
Helix 186	AU6	4	219	230	Right-handed alpha
Helix 187	AU7	4	235	240	Right-handed alpha
Helix 188	AU8	5	75	107	Right-handed alpha
Helix 189	AU9	5	117	121	Right-handed 310
Helix 190	AV1	5	135	159	Right-handed alpha
Helix 191	AV2	5	183	187	Right-handed 310
Helix 192	AV3	5	196	225	Right-handed alpha
Helix 193	AV4	5	227	238	Right-handed alpha
Helix 194	AV5	5	243	247	Right-handed 310
Helix 195	AV6	6	70	102	Right-handed alpha
Helix 196	AV7	6	123	149	Right-handed alpha
Helix 197	AV8	6	173	177	Right-handed 310
Helix 198	AV9	6	183	213	Right-handed alpha
Helix 199	AW1	6	215	226	Right-handed alpha
Helix 200	AW2	6	231	236	Right-handed alpha
Helix 201	AW3	6	267	271	Right-handed 310

There are 18 sheets in PDB entry 9KQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	112	first strand
Strand 2	D	80	87	anti-parallel
Strand 3	D	133	138	anti-parallel
Strand 4	D	144	148	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	100	103	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	E	46	49	anti-parallel
Strand 3	E	31	37	anti-parallel
Strand 4	E	17	20	anti-parallel
Strand 5	E	68	70	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	142	143	anti-parallel
Strand 3	F	149	150	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	74	first strand
Strand 2	G	77	78	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	79	81	first strand
Strand 2	K	87	89	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	114	115	first strand
Strand 2	a	118	119	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	68	69	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	256	259	first strand
Strand 2	5	262	265	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	237	239	first strand
Strand 2	6	242	244	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KQP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQP