Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KQQ entry

There are 20 chains in PDB entry 9KQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	GLY 751
B	ALA 2	PHE 733
C	SER 2	TYR 81
D	TRP 50	VAL 192
E	ARG 12	VAL 71
F	ASP 81	ARG 245
G	TYR 119	PHE 138
I	MET 1	GLU 33
J	MET 1	PHE 41
K	PHE 49	ALA 130
M	MET 1	SER 31
a	ALA 34	LEU 228
3	THR 24	HIS 243
4	ARG 38	LEU 244
5	GLY 43	HIS 273
6	ARG 39	PRO 272
7	ASP 44	HIS 259
8	LYS 34	PRO 255
L	GLY 66	THR 205
b	GLY 35	TYR 227

There are169 helices in PDB entry 9KQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	46	55	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	65	98	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	155	183	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	204	Right-handed alpha
Helix 11	AB2	A	205	220	Right-handed alpha
Helix 12	AB3	A	220	230	Right-handed alpha
Helix 13	AB4	A	239	246	Right-handed alpha
Helix 14	AB5	A	246	254	Right-handed alpha
Helix 15	AB6	A	255	260	Right-handed 310
Helix 16	AB7	A	261	266	Right-handed alpha
Helix 17	AB8	A	268	275	Right-handed 310
Helix 18	AB9	A	290	309	Right-handed alpha
Helix 19	AC1	A	321	329	Right-handed alpha
Helix 20	AC2	A	340	346	Right-handed alpha
Helix 21	AC3	A	348	374	Right-handed alpha
Helix 22	AC4	A	383	416	Right-handed alpha
Helix 23	AC5	A	425	433	Right-handed alpha
Helix 24	AC6	A	433	465	Right-handed alpha
Helix 25	AC7	A	467	471	Right-handed 310
Helix 26	AC8	A	481	493	Right-handed alpha
Helix 27	AC9	A	507	511	Right-handed 310
Helix 28	AD1	A	529	556	Right-handed alpha
Helix 29	AD2	A	565	570	Right-handed alpha
Helix 30	AD3	A	587	618	Right-handed alpha
Helix 31	AD4	A	634	639	Right-handed alpha
Helix 32	AD5	A	641	649	Right-handed alpha
Helix 33	AD6	A	649	654	Right-handed alpha
Helix 34	AD7	A	654	659	Right-handed alpha
Helix 35	AD8	A	665	688	Right-handed alpha
Helix 36	AD9	A	689	707	Right-handed alpha
Helix 37	AE1	A	719	751	Right-handed alpha
Helix 38	AE2	B	9	14	Right-handed alpha
Helix 39	AE3	B	18	27	Right-handed alpha
Helix 40	AE4	B	30	34	Right-handed 310
Helix 41	AE5	B	38	72	Right-handed alpha
Helix 42	AE6	B	73	80	Right-handed alpha
Helix 43	AE7	B	97	106	Right-handed alpha
Helix 44	AE8	B	119	127	Right-handed alpha
Helix 45	AE9	B	131	156	Right-handed alpha
Helix 46	AF1	B	164	169	Right-handed alpha
Helix 47	AF2	B	170	181	Right-handed alpha
Helix 48	AF3	B	183	197	Right-handed alpha
Helix 49	AF4	B	197	203	Right-handed alpha
Helix 50	AF5	B	222	227	Right-handed alpha
Helix 51	AF6	B	229	235	Right-handed 310
Helix 52	AF7	B	269	288	Right-handed alpha
Helix 53	AF8	B	300	308	Right-handed alpha
Helix 54	AF9	B	321	329	Right-handed alpha
Helix 55	AG1	B	329	355	Right-handed alpha
Helix 56	AG2	B	364	397	Right-handed alpha
Helix 57	AG3	B	406	414	Right-handed alpha
Helix 58	AG4	B	414	446	Right-handed alpha
Helix 59	AG5	B	448	452	Right-handed 310
Helix 60	AG6	B	457	467	Right-handed alpha
Helix 61	AG7	B	476	480	Right-handed 310
Helix 62	AG8	B	483	490	Right-handed alpha
Helix 63	AG9	B	493	502	Right-handed alpha
Helix 64	AH1	B	513	540	Right-handed alpha
Helix 65	AH2	B	549	554	Right-handed 310
Helix 66	AH3	B	571	603	Right-handed alpha
Helix 67	AH4	B	606	613	Right-handed alpha
Helix 68	AH5	B	615	628	Right-handed alpha
Helix 69	AH6	B	643	666	Right-handed alpha
Helix 70	AH7	B	667	685	Right-handed alpha
Helix 71	AH8	B	701	733	Right-handed alpha
Helix 72	AH9	C	15	21	Right-handed alpha
Helix 73	AI1	C	44	48	Right-handed 310
Helix 74	AI2	C	52	58	Right-handed alpha
Helix 75	AI3	D	72	78	Right-handed alpha
Helix 76	AI4	D	114	129	Right-handed alpha
Helix 77	AI5	D	171	175	Right-handed 310
Helix 78	AI6	D	177	182	Right-handed 310
Helix 79	AI7	D	188	192	Right-handed 310
Helix 80	AI8	F	81	85	Right-handed 310
Helix 81	AI9	F	91	110	Right-handed alpha
Helix 82	AJ1	F	116	139	Right-handed alpha
Helix 83	AJ2	F	154	161	Right-handed alpha
Helix 84	AJ3	F	167	194	Right-handed alpha
Helix 85	AJ4	F	199	204	Right-handed alpha
Helix 86	AJ5	F	206	216	Right-handed alpha
Helix 87	AJ6	F	219	230	Right-handed alpha
Helix 88	AJ7	F	236	240	Right-handed 310
Helix 89	AJ8	G	120	130	Right-handed alpha
Helix 90	AJ9	I	5	16	Right-handed alpha
Helix 91	AK1	I	16	31	Right-handed alpha
Helix 92	AK2	J	2	9	Right-handed alpha
Helix 93	AK3	J	10	33	Right-handed alpha
Helix 94	AK4	K	52	71	Right-handed alpha
Helix 95	AK5	K	103	129	Right-handed alpha
Helix 96	AK6	M	4	31	Right-handed alpha
Helix 97	AK7	a	44	48	Right-handed 310
Helix 98	AK8	a	64	95	Right-handed alpha
Helix 99	AK9	a	103	107	Right-handed 310
Helix 100	AL1	a	123	144	Right-handed alpha
Helix 101	AL2	a	147	153	Right-handed alpha
Helix 102	AL3	a	155	159	Right-handed 310
Helix 103	AL4	a	166	199	Right-handed alpha
Helix 104	AL5	a	201	212	Right-handed alpha
Helix 105	AL6	3	31	35	Right-handed 310
Helix 106	AL7	3	63	85	Right-handed alpha
Helix 107	AL8	3	86	94	Right-handed alpha
Helix 108	AL9	3	124	149	Right-handed alpha
Helix 109	AM1	3	151	155	Right-handed 310
Helix 110	AM2	3	160	164	Right-handed 310
Helix 111	AM3	3	175	180	Right-handed alpha
Helix 112	AM4	3	188	218	Right-handed alpha
Helix 113	AM5	3	220	231	Right-handed alpha
Helix 114	AM6	3	236	243	Right-handed alpha
Helix 115	AM7	4	69	104	Right-handed alpha
Helix 116	AM8	4	107	112	Right-handed alpha
Helix 117	AM9	4	113	120	Right-handed 310
Helix 118	AN1	4	125	150	Right-handed alpha
Helix 119	AN2	4	175	179	Right-handed 310
Helix 120	AN3	4	187	216	Right-handed alpha
Helix 121	AN4	4	219	230	Right-handed alpha
Helix 122	AN5	4	235	244	Right-handed alpha
Helix 123	AN6	5	75	107	Right-handed alpha
Helix 124	AN7	5	111	115	Right-handed 310
Helix 125	AN8	5	117	121	Right-handed 310
Helix 126	AN9	5	135	159	Right-handed alpha
Helix 127	AO1	5	183	187	Right-handed 310
Helix 128	AO2	5	195	225	Right-handed alpha
Helix 129	AO3	5	227	238	Right-handed alpha
Helix 130	AO4	5	243	248	Right-handed alpha
Helix 131	AO5	6	70	102	Right-handed alpha
Helix 132	AO6	6	121	123	Right-handed 310
Helix 133	AO7	6	124	149	Right-handed alpha
Helix 134	AO8	6	151	155	Right-handed 310
Helix 135	AO9	6	173	177	Right-handed 310
Helix 136	AP1	6	183	213	Right-handed alpha
Helix 137	AP2	6	215	226	Right-handed alpha
Helix 138	AP3	6	231	236	Right-handed alpha
Helix 139	AP4	6	267	271	Right-handed 310
Helix 140	AP5	7	76	110	Right-handed alpha
Helix 141	AP6	7	120	129	Right-handed alpha
Helix 142	AP7	7	133	158	Right-handed alpha
Helix 143	AP8	7	160	164	Right-handed 310
Helix 144	AP9	7	183	188	Right-handed alpha
Helix 145	AQ1	7	196	229	Right-handed alpha
Helix 146	AQ2	7	231	242	Right-handed alpha
Helix 147	AQ3	7	247	251	Right-handed 310
Helix 148	AQ4	8	45	49	Right-handed 310
Helix 149	AQ5	8	65	99	Right-handed alpha
Helix 150	AQ6	8	109	117	Right-handed alpha
Helix 151	AQ7	8	121	146	Right-handed alpha
Helix 152	AQ8	8	148	152	Right-handed 310
Helix 153	AQ9	8	159	164	Right-handed 310
Helix 154	AR1	8	173	177	Right-handed 310
Helix 155	AR2	8	186	216	Right-handed alpha
Helix 156	AR3	8	218	229	Right-handed alpha
Helix 157	AR4	8	234	238	Right-handed 310
Helix 158	AR5	8	248	253	Right-handed alpha
Helix 159	AR6	L	75	84	Right-handed alpha
Helix 160	AR7	L	93	117	Right-handed alpha
Helix 161	AR8	L	124	153	Right-handed alpha
Helix 162	AR9	L	177	205	Right-handed alpha
Helix 163	AS1	b	44	48	Right-handed 310
Helix 164	AS2	b	64	95	Right-handed alpha
Helix 165	AS3	b	123	141	Right-handed alpha
Helix 166	AS4	b	148	153	Right-handed alpha
Helix 167	AS5	b	155	159	Right-handed 310
Helix 168	AS6	b	169	199	Right-handed alpha
Helix 169	AS7	b	201	212	Right-handed alpha

There are 17 sheets in PDB entry 9KQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	167	168	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	112	first strand
Strand 2	D	80	87	anti-parallel
Strand 3	D	133	138	anti-parallel
Strand 4	D	144	148	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	94	first strand
Strand 2	D	100	103	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	E	46	49	anti-parallel
Strand 3	E	31	37	anti-parallel
Strand 4	E	17	20	anti-parallel
Strand 5	E	68	70	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	142	143	anti-parallel
Strand 3	F	149	150	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	79	81	first strand
Strand 2	K	87	89	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	114	115	first strand
Strand 2	a	118	119	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	256	259	first strand
Strand 2	5	262	265	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	237	238	first strand
Strand 2	6	243	244	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	253	254	first strand
Strand 2	6	261	262	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	114	115	first strand
Strand 2	b	118	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQQ