Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KQW entry

There are 2 chains in PDB entry 9KQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14GLU 330
B
 SER 18GLU 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9KQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed 310
Helix 2
AA2
A
42 58Right-handed alpha
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
78 84Right-handed alpha
Helix 5
AA5
A
88 110Right-handed alpha
Helix 6
AA6
A
113 126Right-handed alpha
Helix 7
AA7
A
133 138Right-handed 310
Helix 8
AA8
A
141 158Right-handed alpha
Helix 9
AA9
A
161 176Right-handed alpha
Helix 10
AB1
A
185 197Right-handed alpha
Helix 11
AB2
A
198 210Right-handed alpha
Helix 12
AB3
A
215 247Right-handed alpha
Helix 13
AB4
A
255 265Right-handed alpha
Helix 14
AB5
A
267 294Right-handed alpha
Helix 15
AB6
A
299 323Right-handed alpha
Helix 16
AB7
A
324 327Right-handed 310
Helix 17
AB8
B
24 28Right-handed 310
Helix 18
AB9
B
42 58Right-handed alpha
Helix 19
AC1
B
62 72Right-handed alpha
Helix 20
AC2
B
78 84Right-handed alpha
Helix 21
AC3
B
88 111Right-handed alpha
Helix 22
AC4
B
113 126Right-handed alpha
Helix 23
AC5
B
133 138Right-handed 310
Helix 24
AC6
B
141 158Right-handed alpha
Helix 25
AC7
B
161 176Right-handed alpha
Helix 26
AC8
B
185 197Right-handed alpha
Helix 27
AC9
B
198 209Right-handed alpha
Helix 28
AD1
B
215 222Right-handed alpha
Helix 29
AD2
B
222 246Right-handed alpha
Helix 30
AD3
B
255 265Right-handed alpha
Helix 31
AD4
B
267 294Right-handed alpha
Helix 32
AD5
B
299 323Right-handed alpha
Helix 33
AD6
B
324 327Right-handed 310
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There are 2 sheets in PDB entry 9KQW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
38 40anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
38 40anti-parallel
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