Analysis of interatomic Contacts of Structural Units in PDB entry:
9KQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KQZ entry

There is 1 chain in PDB entry 9KQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLN 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9KQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 87Right-handed 310
Helix 2
AA2
A
160 164Right-handed 310
Helix 3
AA3
A
190 195Right-handed alpha
Helix 4
AA4
A
205 217Right-handed alpha
Helix 5
AA5
A
242 251Right-handed alpha
Helix 6
AA6
A
265 271Right-handed alpha
Helix 7
AA7
A
276 280Right-handed 310
Helix 8
AA8
A
282 300Right-handed alpha
Helix 9
AA9
A
322 339Right-handed alpha
Helix 10
AB1
A
347 352Right-handed alpha
Helix 11
AB2
A
363 366Right-handed 310
Helix 12
AB3
A
374 384Right-handed alpha
Helix 13
AB4
A
385 391Right-handed 310
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There are 7 sheets in PDB entry 9KQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 14first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
53 58anti-parallel
Strand 4
A
105 107anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
135 137anti-parallel
Strand 3
A
168 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
131 133anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
120 127anti-parallel
Strand 4
A
38 45anti-parallel
Strand 5
A
145 148anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
98 100anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
183 189parallel
Strand 3
A
259 263parallel
Strand 4
A
303 307parallel
Strand 5
A
344 346parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
357 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il