Analysis of interatomic Contacts of Structural Units in PDB entry:
9KR0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KR0 entry

There is 1 chain in PDB entry 9KR0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -8GLN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 9KR0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 78Right-handed 310
Helix 2
AA2
A
151 153Right-handed 310
Helix 3
AA3
A
181 186Right-handed alpha
Helix 4
AA4
A
196 208Right-handed alpha
Helix 5
AA5
A
233 242Right-handed alpha
Helix 6
AA6
A
256 262Right-handed alpha
Helix 7
AA7
A
267 271Right-handed 310
Helix 8
AA8
A
273 291Right-handed alpha
Helix 9
AA9
A
313 330Right-handed alpha
Helix 10
AB1
A
338 343Right-handed alpha
Helix 11
AB2
A
354 357Right-handed 310
Helix 12
AB3
A
365 375Right-handed alpha
Helix 13
AB4
A
376 382Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9KR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 5first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
44 49anti-parallel
Strand 4
A
96 98anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
126 128anti-parallel
Strand 3
A
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
79 80anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
111 118anti-parallel
Strand 4
A
29 36anti-parallel
Strand 5
A
135 139anti-parallel
Strand 6
A
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
89 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 219first strand
Strand 2
A
174 180parallel
Strand 3
A
250 254parallel
Strand 4
A
294 298parallel
Strand 5
A
335 337parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
348 352anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il