Analysis of interatomic Contacts of Structural Units in PDB entry:
9KRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KRJ entry

There are 4 chains in PDB entry 9KRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 135GLN 320
A
 ILE 322LYS 480
B
 TYR 136GLN 320
B
 ILE 322LYS 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9KRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
193 212Right-handed alpha
Helix 2
AA2
A
215 221Right-handed 310
Helix 3
AA3
A
244 252Right-handed alpha
Helix 4
AA4
A
258 277Right-handed alpha
Helix 5
AA5
A
289 291Right-handed 310
Helix 6
AA6
A
324 328Right-handed 310
Helix 7
AA7
A
329 334Right-handed alpha
Helix 8
AA8
A
341 357Right-handed alpha
Helix 9
AA9
A
365 378Right-handed alpha
Helix 10
AB1
A
381 387Right-handed alpha
Helix 11
AB2
A
390 393Right-handed 310
Helix 12
AB3
A
422 427Right-handed alpha
Helix 13
AB4
A
433 437Right-handed 310
Helix 14
AB5
A
445 460Right-handed alpha
Helix 15
AB6
A
469 474Right-handed alpha
Helix 16
AB7
A
476 480Right-handed 310
Helix 17
AB8
B
193 212Right-handed alpha
Helix 18
AB9
B
216 221Right-handed 310
Helix 19
AC1
B
244 252Right-handed alpha
Helix 20
AC2
B
258 277Right-handed alpha
Helix 21
AC3
B
289 291Right-handed 310
Helix 22
AC4
B
307 311Right-handed 310
Helix 23
AC5
B
324 328Right-handed 310
Helix 24
AC6
B
329 334Right-handed alpha
Helix 25
AC7
B
340 357Right-handed alpha
Helix 26
AC8
B
365 378Right-handed alpha
Helix 27
AC9
B
381 386Right-handed alpha
Helix 28
AD1
B
387 393Right-handed 310
Helix 29
AD2
B
422 427Right-handed alpha
Helix 30
AD3
B
433 437Right-handed 310
Helix 31
AD4
B
445 460Right-handed alpha
Helix 32
AD5
B
469 475Right-handed alpha
Helix 33
AD6
B
476 480Right-handed 310
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There are 8 sheets in PDB entry 9KRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
183 190anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
A
224 230anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
312 313anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
303 305anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
403 405anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
159 167anti-parallel
Strand 3
B
171 178anti-parallel
Strand 4
B
183 190anti-parallel
Strand 5
B
233 239anti-parallel
Strand 6
B
224 230anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
312 313anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
303 305anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
403 405anti-parallel
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