Analysis of interatomic Contacts of Structural Units in PDB entry:
9KRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KRL entry

There is 1 chain in PDB entry 9KRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8LEU 1262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9KRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
27 35Right-handed alpha
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
58 74Right-handed alpha
Helix 5
AA5
A
80 86Right-handed alpha
Helix 6
AA6
A
88 104Right-handed alpha
Helix 7
AA7
A
108 122Right-handed alpha
Helix 8
AA8
A
128 150Right-handed alpha
Helix 9
AA9
A
151 179Right-handed alpha
Helix 10
AB1
A
182 187Right-handed alpha
Helix 11
AB2
A
190 200Right-handed alpha
Helix 12
AB3
A
201 203Right-handed 310
Helix 13
AB4
A
204 209Right-handed alpha
Helix 14
AB5
A
210 212Right-handed 310
Helix 15
AB6
A
213 231Right-handed alpha
Helix 16
AB7
A
234 236Right-handed 310
Helix 17
AB8
A
237 242Right-handed alpha
Helix 18
AB9
A
246 281Right-handed alpha
Helix 19
AC1
A
282 290Right-handed alpha
Helix 20
AC2
A
291 326Right-handed alpha
Helix 21
AC3
A
329 343Right-handed alpha
Helix 22
AC4
A
350 390Right-handed alpha
Helix 23
AC5
A
697 706Right-handed alpha
Helix 24
AC6
A
710 722Right-handed alpha
Helix 25
AC7
A
723 744Right-handed alpha
Helix 26
AC8
A
760 806Right-handed alpha
Helix 27
AC9
A
817 835Right-handed alpha
Helix 28
AD1
A
835 860Right-handed alpha
Helix 29
AD2
A
861 866Right-handed 310
Helix 30
AD3
A
867 887Right-handed alpha
Helix 31
AD4
A
888 908Right-handed alpha
Helix 32
AD5
A
911 917Right-handed alpha
Helix 33
AD6
A
920 970Right-handed alpha
Helix 34
AD7
A
975 987Right-handed alpha
Helix 35
AD8
A
988 1014Right-handed alpha
Helix 36
AD9
A
1083 1089Right-handed alpha
Helix 37
AE1
A
1110 1115Right-handed alpha
Helix 38
AE2
A
1142 1150Right-handed alpha
Helix 39
AE3
A
1156 1161Right-handed alpha
Helix 40
AE4
A
1171 1175Right-handed 310
Helix 41
AE5
A
1178 1194Right-handed alpha
Helix 42
AE6
A
1212 1223Right-handed alpha
Helix 43
AE7
A
1234 1238Right-handed 310
Helix 44
AE8
A
1257 1261Right-handed 310
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There are 2 sheets in PDB entry 9KRL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1064 1065first strand
Strand 2
A
1041 1042anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1120first strand
Strand 2
A
1197 1201parallel
Strand 3
A
1228 1231parallel
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