Analysis of interatomic Contacts of Structural Units in PDB entry:
9KRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KRM entry

There is 1 chain in PDB entry 9KRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8LEU 1262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9KRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
27 35Right-handed alpha
Helix 3
AA3
A
52 74Right-handed alpha
Helix 4
AA4
A
81 122Right-handed alpha
Helix 5
AA5
A
129 150Right-handed alpha
Helix 6
AA6
A
151 178Right-handed alpha
Helix 7
AA7
A
182 189Right-handed alpha
Helix 8
AA8
A
190 200Right-handed alpha
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
A
217 230Right-handed alpha
Helix 11
AB2
A
234 236Right-handed 310
Helix 12
AB3
A
237 280Right-handed alpha
Helix 13
AB4
A
282 290Right-handed alpha
Helix 14
AB5
A
291 326Right-handed alpha
Helix 15
AB6
A
329 343Right-handed alpha
Helix 16
AB7
A
350 390Right-handed alpha
Helix 17
AB8
A
697 706Right-handed alpha
Helix 18
AB9
A
710 744Right-handed alpha
Helix 19
AC1
A
760 806Right-handed alpha
Helix 20
AC2
A
809 814Right-handed alpha
Helix 21
AC3
A
817 834Right-handed alpha
Helix 22
AC4
A
835 861Right-handed alpha
Helix 23
AC5
A
862 865Right-handed 310
Helix 24
AC6
A
867 887Right-handed alpha
Helix 25
AC7
A
888 908Right-handed alpha
Helix 26
AC8
A
911 917Right-handed alpha
Helix 27
AC9
A
921 969Right-handed alpha
Helix 28
AD1
A
975 986Right-handed alpha
Helix 29
AD2
A
988 1015Right-handed alpha
Helix 30
AD3
A
1084 1089Right-handed alpha
Helix 31
AD4
A
1110 1115Right-handed alpha
Helix 32
AD5
A
1130 1135Right-handed alpha
Helix 33
AD6
A
1143 1153Right-handed alpha
Helix 34
AD7
A
1156 1162Right-handed alpha
Helix 35
AD8
A
1178 1193Right-handed alpha
Helix 36
AD9
A
1210 1222Right-handed alpha
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There are 2 sheets in PDB entry 9KRM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1041 1042first strand
Strand 2
A
1064 1065anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1118 1120first strand
Strand 2
A
1198 1200parallel
Strand 3
A
1228 1231parallel
Strand 4
A
1071 1074parallel
Strand 5
A
1243 1246parallel
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