Analysis of interatomic Contacts of Structural Units in PDB entry:
9KRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KRT entry

There is 1 chain in PDB entry 9KRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LEU 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9KRT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
54 57Right-handed 310
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
87 103Right-handed alpha
Helix 7
AA7
A
117 126Right-handed alpha
Helix 8
AA8
A
127 130Right-handed 310
Helix 9
AA9
A
141 152Right-handed alpha
Helix 10
AB1
A
166 181Right-handed alpha
Helix 11
AB2
A
184 188Right-handed 310
Helix 12
AB3
A
201 209Right-handed alpha
Helix 13
AB4
A
212 216Right-handed 310
Helix 14
AB5
A
270 277Right-handed alpha
Helix 15
AB6
A
294 302Right-handed alpha
Helix 16
AB7
A
323 332Right-handed alpha
Helix 17
AB8
A
333 335Right-handed 310
Helix 18
AB9
A
340 347Right-handed alpha
Helix 19
AC1
A
347 356Right-handed alpha
Helix 20
AC2
A
391 404Right-handed alpha
Helix 21
AC3
A
412 426Right-handed alpha
Helix 22
AC4
A
430 440Right-handed alpha
Helix 23
AC5
A
452 466Right-handed alpha
Helix 24
AC6
A
475 487Right-handed alpha
Helix 25
AC7
A
506 519Right-handed alpha
Helix 26
AC8
A
520 522Right-handed 310
Helix 27
AC9
A
524 535Right-handed alpha
Helix 28
AD1
A
535 547Right-handed alpha
Helix 29
AD2
A
559 572Right-handed alpha
Helix 30
AD3
A
605 623Right-handed alpha
Helix 31
AD4
A
642 659Right-handed alpha
Helix 32
AD5
A
669 675Right-handed alpha
Helix 33
AD6
A
675 683Right-handed alpha
Helix 34
AD7
A
699 714Right-handed alpha
Helix 35
AD8
A
739 755Right-handed alpha
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There are 4 sheets in PDB entry 9KRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
105 106parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
224 225anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 499first strand
Strand 2
A
468 473parallel
Strand 3
A
443 447parallel
Strand 4
A
551 554parallel
Strand 5
A
731 733parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 668first strand
Strand 2
A
628 632parallel
Strand 3
A
694 696parallel
Strand 4
A
591 596parallel
Strand 5
A
581 588anti-parallel
Strand 6
A
723 725anti-parallel
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