Analysis of interatomic Contacts of Structural Units in PDB entry:
9KRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KRU entry

There is 1 chain in PDB entry 9KRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12ALA 772
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 9KRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
40 48Right-handed alpha
Helix 3
AA3
A
52 62Right-handed alpha
Helix 4
AA4
A
65 70Right-handed alpha
Helix 5
AA5
A
71 73Right-handed 310
Helix 6
AA6
A
93 95Right-handed 310
Helix 7
AA7
A
96 112Right-handed alpha
Helix 8
AA8
A
124 134Right-handed alpha
Helix 9
AA9
A
150 163Right-handed alpha
Helix 10
AB1
A
170 189Right-handed alpha
Helix 11
AB2
A
193 197Right-handed 310
Helix 12
AB3
A
205 218Right-handed alpha
Helix 13
AB4
A
221 223Right-handed 310
Helix 14
AB5
A
257 262Right-handed alpha
Helix 15
AB6
A
278 283Right-handed alpha
Helix 16
AB7
A
302 309Right-handed alpha
Helix 17
AB8
A
327 330Right-handed 310
Helix 18
AB9
A
331 342Right-handed alpha
Helix 19
AC1
A
348 364Right-handed alpha
Helix 20
AC2
A
368 375Right-handed alpha
Helix 21
AC3
A
394 412Right-handed alpha
Helix 22
AC4
A
420 430Right-handed alpha
Helix 23
AC5
A
433 454Right-handed alpha
Helix 24
AC6
A
467 480Right-handed alpha
Helix 25
AC7
A
490 502Right-handed alpha
Helix 26
AC8
A
519 532Right-handed alpha
Helix 27
AC9
A
533 535Right-handed 310
Helix 28
AD1
A
537 547Right-handed alpha
Helix 29
AD2
A
547 559Right-handed alpha
Helix 30
AD3
A
571 582Right-handed alpha
Helix 31
AD4
A
616 634Right-handed alpha
Helix 32
AD5
A
653 669Right-handed alpha
Helix 33
AD6
A
679 685Right-handed alpha
Helix 34
AD7
A
685 693Right-handed alpha
Helix 35
AD8
A
709 723Right-handed alpha
Helix 36
AD9
A
748 772Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9KRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 119first strand
Strand 2
A
75 80parallel
Strand 3
A
141 144parallel
Strand 4
A
167 169parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
225 229anti-parallel
Strand 3
A
199 202parallel
Strand 4
A
267 270parallel
Strand 5
A
290 293parallel
Strand 6
A
314 315parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 512first strand
Strand 2
A
484 488parallel
Strand 3
A
459 462parallel
Strand 4
A
563 566parallel
Strand 5
A
739 742parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 678first strand
Strand 2
A
639 643parallel
Strand 3
A
704 706parallel
Strand 4
A
603 607parallel
Strand 5
A
592 598anti-parallel
Strand 6
A
727 734anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il