Analysis of interatomic Contacts of Structural Units in PDB entry:
9KRV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KRV entry

There are 6 chains in PDB entry 9KRV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 428	ARG 773
B	LEU 428	ARG 773
C	GLU 429	ARG 773
D	LEU 428	ARG 773
E	THR 12	ARG 773
F	THR 11	ARG 773

There are128 helices in PDB entry 9KRV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	428	432	Right-handed 310
Helix 2	AA2	A	433	453	Right-handed alpha
Helix 3	AA3	A	467	480	Right-handed alpha
Helix 4	AA4	A	492	502	Right-handed alpha
Helix 5	AA5	A	519	531	Right-handed alpha
Helix 6	AA6	A	532	535	Right-handed 310
Helix 7	AA7	A	537	547	Right-handed alpha
Helix 8	AA8	A	547	558	Right-handed alpha
Helix 9	AA9	A	571	583	Right-handed alpha
Helix 10	AB1	A	616	634	Right-handed alpha
Helix 11	AB2	A	653	669	Right-handed alpha
Helix 12	AB3	A	679	684	Right-handed alpha
Helix 13	AB4	A	685	693	Right-handed alpha
Helix 14	AB5	A	709	724	Right-handed alpha
Helix 15	AB6	A	748	773	Right-handed alpha
Helix 16	AB7	B	433	453	Right-handed alpha
Helix 17	AB8	B	470	480	Right-handed alpha
Helix 18	AB9	B	490	502	Right-handed alpha
Helix 19	AC1	B	513	517	Right-handed 310
Helix 20	AC2	B	519	531	Right-handed alpha
Helix 21	AC3	B	537	546	Right-handed alpha
Helix 22	AC4	B	547	558	Right-handed alpha
Helix 23	AC5	B	571	583	Right-handed alpha
Helix 24	AC6	B	616	634	Right-handed alpha
Helix 25	AC7	B	653	669	Right-handed alpha
Helix 26	AC8	B	679	685	Right-handed alpha
Helix 27	AC9	B	685	693	Right-handed alpha
Helix 28	AD1	B	709	723	Right-handed alpha
Helix 29	AD2	B	748	772	Right-handed alpha
Helix 30	AD3	C	436	454	Right-handed alpha
Helix 31	AD4	C	467	480	Right-handed alpha
Helix 32	AD5	C	490	502	Right-handed alpha
Helix 33	AD6	C	519	531	Right-handed alpha
Helix 34	AD7	C	532	535	Right-handed 310
Helix 35	AD8	C	537	546	Right-handed alpha
Helix 36	AD9	C	547	558	Right-handed alpha
Helix 37	AE1	C	571	583	Right-handed alpha
Helix 38	AE2	C	616	633	Right-handed alpha
Helix 39	AE3	C	653	669	Right-handed alpha
Helix 40	AE4	C	679	685	Right-handed alpha
Helix 41	AE5	C	685	693	Right-handed alpha
Helix 42	AE6	C	709	724	Right-handed alpha
Helix 43	AE7	C	748	773	Right-handed alpha
Helix 44	AE8	D	428	432	Right-handed 310
Helix 45	AE9	D	436	453	Right-handed alpha
Helix 46	AF1	D	467	481	Right-handed alpha
Helix 47	AF2	D	490	502	Right-handed alpha
Helix 48	AF3	D	504	508	Right-handed 310
Helix 49	AF4	D	519	531	Right-handed alpha
Helix 50	AF5	D	532	535	Right-handed 310
Helix 51	AF6	D	537	545	Right-handed alpha
Helix 52	AF7	D	547	558	Right-handed alpha
Helix 53	AF8	D	571	583	Right-handed alpha
Helix 54	AF9	D	616	634	Right-handed alpha
Helix 55	AG1	D	653	669	Right-handed alpha
Helix 56	AG2	D	679	685	Right-handed alpha
Helix 57	AG3	D	685	693	Right-handed alpha
Helix 58	AG4	D	709	724	Right-handed alpha
Helix 59	AG5	D	748	771	Right-handed alpha
Helix 60	AG6	E	13	22	Right-handed alpha
Helix 61	AG7	E	40	48	Right-handed alpha
Helix 62	AG8	E	52	62	Right-handed alpha
Helix 63	AG9	E	65	70	Right-handed alpha
Helix 64	AH1	E	93	95	Right-handed 310
Helix 65	AH2	E	96	112	Right-handed alpha
Helix 66	AH3	E	124	135	Right-handed alpha
Helix 67	AH4	E	150	163	Right-handed alpha
Helix 68	AH5	E	169	189	Right-handed alpha
Helix 69	AH6	E	206	218	Right-handed alpha
Helix 70	AH7	E	246	250	Right-handed 310
Helix 71	AH8	E	257	262	Right-handed alpha
Helix 72	AH9	E	278	285	Right-handed alpha
Helix 73	AI1	E	302	310	Right-handed alpha
Helix 74	AI2	E	327	330	Right-handed 310
Helix 75	AI3	E	331	342	Right-handed alpha
Helix 76	AI4	E	348	365	Right-handed alpha
Helix 77	AI5	E	394	411	Right-handed alpha
Helix 78	AI6	E	420	431	Right-handed alpha
Helix 79	AI7	E	433	453	Right-handed alpha
Helix 80	AI8	E	467	480	Right-handed alpha
Helix 81	AI9	E	492	502	Right-handed alpha
Helix 82	AJ1	E	504	509	Right-handed 310
Helix 83	AJ2	E	519	531	Right-handed alpha
Helix 84	AJ3	E	537	545	Right-handed alpha
Helix 85	AJ4	E	547	558	Right-handed alpha
Helix 86	AJ5	E	571	583	Right-handed alpha
Helix 87	AJ6	E	616	634	Right-handed alpha
Helix 88	AJ7	E	653	669	Right-handed alpha
Helix 89	AJ8	E	679	685	Right-handed alpha
Helix 90	AJ9	E	685	693	Right-handed alpha
Helix 91	AK1	E	709	724	Right-handed alpha
Helix 92	AK2	E	748	772	Right-handed alpha
Helix 93	AK3	F	12	22	Right-handed alpha
Helix 94	AK4	F	40	48	Right-handed alpha
Helix 95	AK5	F	52	62	Right-handed alpha
Helix 96	AK6	F	65	70	Right-handed alpha
Helix 97	AK7	F	71	73	Right-handed 310
Helix 98	AK8	F	92	95	Right-handed 310
Helix 99	AK9	F	96	112	Right-handed alpha
Helix 100	AL1	F	124	133	Right-handed alpha
Helix 101	AL2	F	134	139	Right-handed 310
Helix 102	AL3	F	150	163	Right-handed alpha
Helix 103	AL4	F	174	191	Right-handed alpha
Helix 104	AL5	F	205	219	Right-handed alpha
Helix 105	AL6	F	243	249	Right-handed alpha
Helix 106	AL7	F	258	263	Right-handed 310
Helix 107	AL8	F	278	283	Right-handed alpha
Helix 108	AL9	F	302	310	Right-handed alpha
Helix 109	AM1	F	327	330	Right-handed 310
Helix 110	AM2	F	331	342	Right-handed alpha
Helix 111	AM3	F	348	365	Right-handed alpha
Helix 112	AM4	F	394	411	Right-handed alpha
Helix 113	AM5	F	421	431	Right-handed alpha
Helix 114	AM6	F	433	453	Right-handed alpha
Helix 115	AM7	F	467	480	Right-handed alpha
Helix 116	AM8	F	490	502	Right-handed alpha
Helix 117	AM9	F	513	517	Right-handed 310
Helix 118	AN1	F	519	531	Right-handed alpha
Helix 119	AN2	F	532	535	Right-handed 310
Helix 120	AN3	F	537	547	Right-handed alpha
Helix 121	AN4	F	547	558	Right-handed alpha
Helix 122	AN5	F	571	583	Right-handed alpha
Helix 123	AN6	F	616	634	Right-handed alpha
Helix 124	AN7	F	653	669	Right-handed alpha
Helix 125	AN8	F	679	685	Right-handed alpha
Helix 126	AN9	F	685	693	Right-handed alpha
Helix 127	AO1	F	709	724	Right-handed alpha
Helix 128	AO2	F	748	772	Right-handed alpha

There are 18 sheets in PDB entry 9KRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	512	first strand
Strand 2	A	484	488	parallel
Strand 3	A	459	462	parallel
Strand 4	A	563	566	parallel
Strand 5	A	739	742	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	678	first strand
Strand 2	A	639	643	parallel
Strand 3	A	704	706	parallel
Strand 4	A	603	607	parallel
Strand 5	A	595	598	anti-parallel
Strand 6	A	727	729	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	487	first strand
Strand 2	B	459	462	parallel
Strand 3	B	563	566	parallel
Strand 4	B	740	742	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	678	first strand
Strand 2	B	640	643	parallel
Strand 3	B	704	706	parallel
Strand 4	B	603	607	parallel
Strand 5	B	594	598	anti-parallel
Strand 6	B	727	729	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	510	512	first strand
Strand 2	C	484	488	parallel
Strand 3	C	459	462	parallel
Strand 4	C	563	566	parallel
Strand 5	C	740	742	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	678	first strand
Strand 2	C	639	643	parallel
Strand 3	C	704	706	parallel
Strand 4	C	603	607	parallel
Strand 5	C	595	598	anti-parallel
Strand 6	C	727	729	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	487	first strand
Strand 2	D	459	462	parallel
Strand 3	D	563	566	parallel
Strand 4	D	739	742	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	675	678	first strand
Strand 2	D	640	643	parallel
Strand 3	D	704	706	parallel
Strand 4	D	603	606	parallel
Strand 5	D	592	598	anti-parallel
Strand 6	D	727	734	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	F	30	34	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	80	first strand
Strand 2	E	114	119	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	270	first strand
Strand 2	E	290	293	parallel
Strand 3	E	314	315	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	484	485	first strand
Strand 2	E	459	461	parallel
Strand 3	E	563	566	parallel
Strand 4	E	739	742	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	673	678	first strand
Strand 2	E	639	643	parallel
Strand 3	E	704	706	parallel
Strand 4	E	603	607	parallel
Strand 5	E	592	598	anti-parallel
Strand 6	E	727	734	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	75	79	parallel
Strand 3	F	142	144	parallel
Strand 4	F	167	169	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	202	first strand
Strand 2	F	226	228	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	267	first strand
Strand 2	F	285	292	parallel
Strand 3	F	314	316	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	510	512	first strand
Strand 2	F	484	488	parallel
Strand 3	F	459	462	parallel
Strand 4	F	563	566	parallel
Strand 5	F	739	742	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	675	678	first strand
Strand 2	F	640	643	parallel
Strand 3	F	704	706	parallel
Strand 4	F	603	607	parallel
Strand 5	F	595	598	anti-parallel
Strand 6	F	727	729	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KRV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KRV