Analysis of interatomic Contacts of Structural Units in PDB entry:
9KS0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KS0 entry

There are 7 chains in PDB entry 9KS0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 428	LEU 759
F	LEU 429	LEU 759
G	GLU 422	LEU 759
H	GLY 428	LEU 759
I	LEU 429	LEU 759
J	GLU 422	ASP 641
J	PRO 643	LEU 759

There are 81 helices in PDB entry 9KS0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	430	441	Right-handed alpha
Helix 2	AA2	E	452	466	Right-handed alpha
Helix 3	AA3	E	475	487	Right-handed alpha
Helix 4	AA4	E	506	519	Right-handed alpha
Helix 5	AA5	E	524	535	Right-handed alpha
Helix 6	AA6	E	535	547	Right-handed alpha
Helix 7	AA7	E	559	572	Right-handed alpha
Helix 8	AA8	E	605	622	Right-handed alpha
Helix 9	AA9	E	642	659	Right-handed alpha
Helix 10	AB1	E	669	675	Right-handed alpha
Helix 11	AB2	E	675	681	Right-handed alpha
Helix 12	AB3	E	699	715	Right-handed alpha
Helix 13	AB4	E	739	756	Right-handed alpha
Helix 14	AB5	F	431	441	Right-handed alpha
Helix 15	AB6	F	452	465	Right-handed alpha
Helix 16	AB7	F	475	486	Right-handed alpha
Helix 17	AB8	F	506	519	Right-handed alpha
Helix 18	AB9	F	524	535	Right-handed alpha
Helix 19	AC1	F	535	546	Right-handed alpha
Helix 20	AC2	F	559	572	Right-handed alpha
Helix 21	AC3	F	605	623	Right-handed alpha
Helix 22	AC4	F	642	659	Right-handed alpha
Helix 23	AC5	F	669	675	Right-handed alpha
Helix 24	AC6	F	675	683	Right-handed alpha
Helix 25	AC7	F	699	714	Right-handed alpha
Helix 26	AC8	F	739	755	Right-handed alpha
Helix 27	AC9	G	428	430	Right-handed 310
Helix 28	AD1	G	431	441	Right-handed alpha
Helix 29	AD2	G	452	465	Right-handed alpha
Helix 30	AD3	G	475	487	Right-handed alpha
Helix 31	AD4	G	506	519	Right-handed alpha
Helix 32	AD5	G	524	535	Right-handed alpha
Helix 33	AD6	G	535	546	Right-handed alpha
Helix 34	AD7	G	559	572	Right-handed alpha
Helix 35	AD8	G	605	623	Right-handed alpha
Helix 36	AD9	G	642	659	Right-handed alpha
Helix 37	AE1	G	669	675	Right-handed alpha
Helix 38	AE2	G	675	683	Right-handed alpha
Helix 39	AE3	G	699	714	Right-handed alpha
Helix 40	AE4	G	739	755	Right-handed alpha
Helix 41	AE5	H	430	440	Right-handed alpha
Helix 42	AE6	H	452	465	Right-handed alpha
Helix 43	AE7	H	475	486	Right-handed alpha
Helix 44	AE8	H	506	519	Right-handed alpha
Helix 45	AE9	H	520	522	Right-handed 310
Helix 46	AF1	H	524	535	Right-handed alpha
Helix 47	AF2	H	535	547	Right-handed alpha
Helix 48	AF3	H	559	572	Right-handed alpha
Helix 49	AF4	H	605	623	Right-handed alpha
Helix 50	AF5	H	642	659	Right-handed alpha
Helix 51	AF6	H	669	675	Right-handed alpha
Helix 52	AF7	H	675	683	Right-handed alpha
Helix 53	AF8	H	699	712	Right-handed alpha
Helix 54	AF9	H	739	756	Right-handed alpha
Helix 55	AG1	I	431	441	Right-handed alpha
Helix 56	AG2	I	452	465	Right-handed alpha
Helix 57	AG3	I	475	486	Right-handed alpha
Helix 58	AG4	I	506	519	Right-handed alpha
Helix 59	AG5	I	524	535	Right-handed alpha
Helix 60	AG6	I	535	546	Right-handed alpha
Helix 61	AG7	I	559	572	Right-handed alpha
Helix 62	AG8	I	605	623	Right-handed alpha
Helix 63	AG9	I	642	659	Right-handed alpha
Helix 64	AH1	I	669	675	Right-handed alpha
Helix 65	AH2	I	675	683	Right-handed alpha
Helix 66	AH3	I	699	715	Right-handed alpha
Helix 67	AH4	I	739	755	Right-handed alpha
Helix 68	AH5	J	428	430	Right-handed 310
Helix 69	AH6	J	431	441	Right-handed alpha
Helix 70	AH7	J	452	465	Right-handed alpha
Helix 71	AH8	J	475	486	Right-handed alpha
Helix 72	AH9	J	506	519	Right-handed alpha
Helix 73	AI1	J	524	535	Right-handed alpha
Helix 74	AI2	J	535	547	Right-handed alpha
Helix 75	AI3	J	559	572	Right-handed alpha
Helix 76	AI4	J	605	623	Right-handed alpha
Helix 77	AI5	J	642	659	Right-handed alpha
Helix 78	AI6	J	669	675	Right-handed alpha
Helix 79	AI7	J	675	683	Right-handed alpha
Helix 80	AI8	J	699	714	Right-handed alpha
Helix 81	AI9	J	739	756	Right-handed alpha

There are 12 sheets in PDB entry 9KS0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	497	499	first strand
Strand 2	E	468	473	parallel
Strand 3	E	443	447	parallel
Strand 4	E	551	554	parallel
Strand 5	E	731	733	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	663	668	first strand
Strand 2	E	628	632	parallel
Strand 3	E	694	696	parallel
Strand 4	E	591	595	parallel
Strand 5	E	581	588	anti-parallel
Strand 6	E	723	725	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	497	499	first strand
Strand 2	F	469	473	parallel
Strand 3	F	444	447	parallel
Strand 4	F	551	554	parallel
Strand 5	F	731	733	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	663	668	first strand
Strand 2	F	628	632	parallel
Strand 3	F	694	696	parallel
Strand 4	F	591	596	parallel
Strand 5	F	581	588	anti-parallel
Strand 6	F	723	725	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	497	499	first strand
Strand 2	G	468	473	parallel
Strand 3	G	443	447	parallel
Strand 4	G	551	554	parallel
Strand 5	G	731	733	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	663	668	first strand
Strand 2	G	628	632	parallel
Strand 3	G	694	696	parallel
Strand 4	G	591	596	parallel
Strand 5	G	581	588	anti-parallel
Strand 6	G	723	725	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	497	499	first strand
Strand 2	H	468	473	parallel
Strand 3	H	443	447	parallel
Strand 4	H	551	554	parallel
Strand 5	H	731	733	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	663	668	first strand
Strand 2	H	628	632	parallel
Strand 3	H	694	696	parallel
Strand 4	H	591	596	parallel
Strand 5	H	581	588	anti-parallel
Strand 6	H	723	725	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	497	499	first strand
Strand 2	I	469	473	parallel
Strand 3	I	444	447	parallel
Strand 4	I	551	554	parallel
Strand 5	I	731	733	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	663	668	first strand
Strand 2	I	628	632	parallel
Strand 3	I	694	696	parallel
Strand 4	I	591	596	parallel
Strand 5	I	581	588	anti-parallel
Strand 6	I	723	725	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	497	499	first strand
Strand 2	J	469	473	parallel
Strand 3	J	444	447	parallel
Strand 4	J	551	554	parallel
Strand 5	J	731	733	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	629	631	first strand
Strand 2	J	694	696	parallel
Strand 3	J	591	596	parallel
Strand 4	J	581	588	anti-parallel
Strand 5	J	723	725	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KS0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KS0