Analysis of interatomic Contacts of Structural Units in PDB entry:
9KSL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KSL entry

There is 1 chain in PDB entry 9KSL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLN 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9KSL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
18 20Right-handed 310
Helix 3
AA3
A
35 41Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
103 109Right-handed alpha
Helix 6
AA6
A
114 138Right-handed alpha
Helix 7
AA7
A
142 147Right-handed alpha
Helix 8
AA8
A
148 150Right-handed 310
Helix 9
AA9
A
161 172Right-handed alpha
Helix 10
AB1
A
182 197Right-handed alpha
Helix 11
AB2
A
288 290Right-handed 310
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There are 4 sheets in PDB entry 9KSL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
245 249parallel
Strand 3
A
273 286anti-parallel
Strand 4
A
93 102anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
245 249parallel
Strand 3
A
273 286anti-parallel
Strand 4
A
261 268anti-parallel
Strand 5
A
256 258anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
89 91anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
292 299parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
178 181anti-parallel
Strand 5
A
216 220parallel
Strand 6
A
208 213anti-parallel
Strand 7
A
202 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il