Analysis of interatomic Contacts of Structural Units in PDB entry:
9KSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KSM entry

There is 1 chain in PDB entry 9KSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5SER 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9KSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 33Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
51 53Right-handed 310
Helix 4
AA4
A
78 82Right-handed 310
Helix 5
AA5
A
83 85Right-handed 310
Helix 6
AA6
A
86 96Right-handed alpha
Helix 7
AA7
A
97 109Right-handed alpha
Helix 8
AA8
A
120 129Right-handed alpha
Helix 9
AA9
A
139 147Right-handed alpha
Helix 10
AB1
A
148 153Right-handed alpha
Helix 11
AB2
A
154 158Right-handed 310
Helix 12
AB3
A
159 165Right-handed alpha
Helix 13
AB4
A
177 188Right-handed alpha
Helix 14
AB5
A
197 209Right-handed alpha
Helix 15
AB6
A
217 233Right-handed alpha
Helix 16
AB7
A
252 260Right-handed alpha
Helix 17
AB8
A
279 293Right-handed alpha
Helix 18
AB9
A
309 314Right-handed alpha
Helix 19
AC1
A
317 323Right-handed alpha
Helix 20
AC2
A
334 340Right-handed alpha
Helix 21
AC3
A
352 361Right-handed alpha
Helix 22
AC4
A
373 386Right-handed alpha
Helix 23
AC5
A
403 416Right-handed alpha
Helix 24
AC6
A
419 437Right-handed alpha
Helix 25
AC7
A
440 457Right-handed alpha
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There are 2 sheets in PDB entry 9KSM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
36 42parallel
Strand 3
A
8 12parallel
Strand 4
A
112 115parallel
Strand 5
A
131 136parallel
Strand 6
A
211 214parallel
Strand 7
A
236 238parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
297 300parallel
Strand 3
A
267 271parallel
Strand 4
A
344 349parallel
Strand 5
A
365 368parallel
Strand 6
A
390 392parallel
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