Analysis of interatomic Contacts of Structural Units in PDB entry:
9KTM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KTM entry

There are 7 chains in PDB entry 9KTM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 1	ASN 293
A	ALA 1	ASN 293
B	ALA 1	ASN 293
C	ALA 1	ASN 293
D	ALA 1	ASN 293
E	ALA 1	ASN 293
F	ALA 1	ASN 293

There are 21 helices in PDB entry 9KTM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	2	6	Right-handed 310
Helix 2	AA2	G	205	209	Right-handed 310
Helix 3	AA3	G	217	223	Right-handed alpha
Helix 4	AA4	A	2	6	Right-handed 310
Helix 5	AA5	A	205	209	Right-handed 310
Helix 6	AA6	A	217	223	Right-handed alpha
Helix 7	AA7	B	2	6	Right-handed 310
Helix 8	AA8	B	205	209	Right-handed 310
Helix 9	AA9	B	217	223	Right-handed alpha
Helix 10	AB1	C	2	6	Right-handed 310
Helix 11	AB2	C	205	209	Right-handed 310
Helix 12	AB3	C	217	223	Right-handed alpha
Helix 13	AB4	D	2	6	Right-handed 310
Helix 14	AB5	D	205	209	Right-handed 310
Helix 15	AB6	D	217	223	Right-handed alpha
Helix 16	AB7	E	2	6	Right-handed 310
Helix 17	AB8	E	205	209	Right-handed 310
Helix 18	AB9	E	217	223	Right-handed alpha
Helix 19	AC1	F	2	6	Right-handed 310
Helix 20	AC2	F	205	209	Right-handed 310
Helix 21	AC3	F	217	223	Right-handed alpha

There are 42 sheets in PDB entry 9KTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	28	first strand
Strand 2	G	34	36	anti-parallel
Strand 3	G	59	61	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	56	first strand
Strand 2	G	229	233	anti-parallel
Strand 3	G	97	100	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	69	first strand
Strand 2	G	77	87	anti-parallel
Strand 3	G	166	170	anti-parallel
Strand 4	G	155	158	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	69	first strand
Strand 2	G	77	87	anti-parallel
Strand 3	G	250	254	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	257	first strand
Strand 2	G	268	269	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	285	first strand
Strand 2	G	290	291	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	34	36	anti-parallel
Strand 3	A	59	61	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	229	233	anti-parallel
Strand 3	A	97	100	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	77	87	anti-parallel
Strand 3	A	166	170	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	77	87	anti-parallel
Strand 3	A	250	254	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	268	269	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	290	291	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	34	36	anti-parallel
Strand 3	B	59	61	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	229	233	anti-parallel
Strand 3	B	97	100	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	77	87	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	155	158	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	77	87	anti-parallel
Strand 3	B	250	254	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	257	first strand
Strand 2	B	268	269	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	290	291	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	34	36	anti-parallel
Strand 3	C	59	61	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	229	233	anti-parallel
Strand 3	C	97	100	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	77	87	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	155	158	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	77	87	anti-parallel
Strand 3	C	250	254	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	268	269	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	290	291	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	34	36	anti-parallel
Strand 3	D	59	61	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	229	233	anti-parallel
Strand 3	D	97	100	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	77	87	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	155	158	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	77	87	anti-parallel
Strand 3	D	250	254	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	257	first strand
Strand 2	D	268	269	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	290	291	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	34	36	anti-parallel
Strand 3	E	59	61	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	229	233	anti-parallel
Strand 3	E	97	100	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	69	first strand
Strand 2	E	77	87	anti-parallel
Strand 3	E	166	170	anti-parallel
Strand 4	E	155	158	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	69	first strand
Strand 2	E	77	87	anti-parallel
Strand 3	E	250	254	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	257	first strand
Strand 2	E	268	269	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	285	first strand
Strand 2	E	290	291	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	34	36	anti-parallel
Strand 3	F	59	61	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	229	233	anti-parallel
Strand 3	F	97	100	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	69	first strand
Strand 2	F	77	87	anti-parallel
Strand 3	F	166	170	anti-parallel
Strand 4	F	155	158	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	69	first strand
Strand 2	F	77	87	anti-parallel
Strand 3	F	250	254	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	257	first strand
Strand 2	F	268	269	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	285	first strand
Strand 2	F	290	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KTM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KTM