Analysis of interatomic Contacts of Structural Units in PDB entry:
9KTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KTP entry

There are 2 chains in PDB entry 9KTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 328
B
 MET 1ARG 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9KTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
14 33Right-handed alpha
Helix 3
AA3
A
43 59Right-handed alpha
Helix 4
AA4
A
61 67Right-handed alpha
Helix 5
AA5
A
84 88Right-handed 310
Helix 6
AA6
A
131 158Right-handed alpha
Helix 7
AA7
A
165 169Right-handed 310
Helix 8
AA8
A
188 194Right-handed alpha
Helix 9
AA9
A
248 255Right-handed alpha
Helix 10
AB1
A
269 279Right-handed 310
Helix 11
AB2
A
305 309Right-handed 310
Helix 12
AB3
A
320 328Right-handed alpha
Helix 13
AB4
B
9 14Right-handed alpha
Helix 14
AB5
B
14 33Right-handed alpha
Helix 15
AB6
B
43 59Right-handed alpha
Helix 16
AB7
B
61 67Right-handed alpha
Helix 17
AB8
B
131 158Right-handed alpha
Helix 18
AB9
B
165 169Right-handed 310
Helix 19
AC1
B
188 194Right-handed alpha
Helix 20
AC2
B
248 255Right-handed alpha
Helix 21
AC3
B
269 274Right-handed 310
Helix 22
AC4
B
275 279Right-handed alpha
Helix 23
AC5
B
305 309Right-handed 310
Helix 24
AC6
B
320 328Right-handed alpha
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There are 6 sheets in PDB entry 9KTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
34 38parallel
Strand 3
A
243 247anti-parallel
Strand 4
A
208 213anti-parallel
Strand 5
A
287 293anti-parallel
Strand 6
A
177 183anti-parallel
Strand 7
A
109 113anti-parallel
Strand 8
A
79 81anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
283 284anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
264 266anti-parallel
Strand 4
A
199 204anti-parallel
Strand 5
B
280 284anti-parallel
Strand 6
B
186 187anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
34 38parallel
Strand 3
B
243 247anti-parallel
Strand 4
B
208 213anti-parallel
Strand 5
B
287 293anti-parallel
Strand 6
B
177 183anti-parallel
Strand 7
B
109 113anti-parallel
Strand 8
B
79 81anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
196 197parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
264 266anti-parallel
Strand 3
B
219 222anti-parallel
Strand 4
B
232 234anti-parallel
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