Analysis of interatomic Contacts of Structural Units in PDB entry:
9KU0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KU0 entry

There are 4 chains in PDB entry 9KU0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 45	LYS 445
B	HIS 45	LYS 445
C	HIS 45	LYS 445
D	HIS 45	LYS 269

There are 38 helices in PDB entry 9KU0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	61	Right-handed alpha
Helix 2	AA2	A	66	83	Right-handed alpha
Helix 3	AA3	A	128	134	Right-handed alpha
Helix 4	AA4	A	153	162	Right-handed alpha
Helix 5	AA5	A	217	228	Right-handed alpha
Helix 6	AA6	A	246	256	Right-handed alpha
Helix 7	AA7	A	270	274	Right-handed 310
Helix 8	AA8	A	300	312	Right-handed alpha
Helix 9	AA9	A	421	426	Right-handed alpha
Helix 10	AB1	A	426	443	Right-handed alpha
Helix 11	AB2	B	47	61	Right-handed alpha
Helix 12	AB3	B	66	83	Right-handed alpha
Helix 13	AB4	B	128	134	Right-handed alpha
Helix 14	AB5	B	153	162	Right-handed alpha
Helix 15	AB6	B	217	228	Right-handed alpha
Helix 16	AB7	B	246	256	Right-handed alpha
Helix 17	AB8	B	270	274	Right-handed 310
Helix 18	AB9	B	300	312	Right-handed alpha
Helix 19	AC1	B	421	426	Right-handed alpha
Helix 20	AC2	B	426	443	Right-handed alpha
Helix 21	AC3	C	47	61	Right-handed alpha
Helix 22	AC4	C	66	83	Right-handed alpha
Helix 23	AC5	C	128	134	Right-handed alpha
Helix 24	AC6	C	153	162	Right-handed alpha
Helix 25	AC7	C	217	228	Right-handed alpha
Helix 26	AC8	C	246	255	Right-handed alpha
Helix 27	AC9	C	270	274	Right-handed 310
Helix 28	AD1	C	300	312	Right-handed alpha
Helix 29	AD2	C	426	443	Right-handed alpha
Helix 30	AD3	D	47	61	Right-handed alpha
Helix 31	AD4	D	66	83	Right-handed alpha
Helix 32	AD5	D	128	134	Right-handed alpha
Helix 33	AD6	D	153	162	Right-handed alpha
Helix 34	AD7	D	218	228	Right-handed alpha
Helix 35	AD8	D	246	256	Right-handed alpha
Helix 36	AD9	D	300	312	Right-handed alpha
Helix 37	AE1	D	421	426	Right-handed alpha
Helix 38	AE2	D	426	443	Right-handed alpha

There are 20 sheets in PDB entry 9KU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	262	267	anti-parallel
Strand 4	A	276	278	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	334	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	115	first strand
Strand 2	A	118	124	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	144	first strand
Strand 2	A	168	174	anti-parallel
Strand 3	A	182	187	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	234	238	parallel
Strand 4	A	290	294	parallel
Strand 5	A	316	319	parallel
Strand 6	A	364	365	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	338	348	anti-parallel
Strand 3	B	262	267	anti-parallel
Strand 4	B	275	278	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	338	348	anti-parallel
Strand 3	B	327	334	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	114	first strand
Strand 2	B	119	124	anti-parallel
Strand 3	B	139	144	anti-parallel
Strand 4	B	147	148	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	114	first strand
Strand 2	B	119	124	anti-parallel
Strand 3	B	139	144	anti-parallel
Strand 4	B	168	174	anti-parallel
Strand 5	B	182	187	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	207	211	anti-parallel
Strand 3	B	235	238	parallel
Strand 4	B	290	294	parallel
Strand 5	B	316	319	parallel
Strand 6	B	364	365	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	339	348	anti-parallel
Strand 3	C	262	267	anti-parallel
Strand 4	C	276	278	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	339	348	anti-parallel
Strand 3	C	327	333	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	115	first strand
Strand 2	C	118	124	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	144	first strand
Strand 2	C	168	174	anti-parallel
Strand 3	C	182	187	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	200	first strand
Strand 2	C	207	211	anti-parallel
Strand 3	C	235	238	parallel
Strand 4	C	290	294	parallel
Strand 5	C	316	319	parallel
Strand 6	C	364	365	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	338	348	anti-parallel
Strand 3	D	262	266	anti-parallel
Strand 4	D	276	278	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	338	348	anti-parallel
Strand 3	D	327	334	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	115	first strand
Strand 2	D	118	124	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	144	first strand
Strand 2	D	168	174	anti-parallel
Strand 3	D	182	187	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	200	first strand
Strand 2	D	207	211	anti-parallel
Strand 3	D	235	238	parallel
Strand 4	D	290	294	parallel
Strand 5	D	316	319	parallel
Strand 6	D	364	365	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KU0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KU0