Analysis of interatomic Contacts of Structural Units in PDB entry:
9KUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KUA entry

There are 2 chains in PDB entry 9KUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0TYR 484
B
 HIS 0TYR 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9KUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
42 55Right-handed alpha
Helix 3
AA3
A
55 71Right-handed alpha
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
94 96Right-handed 310
Helix 6
AA6
A
106 123Right-handed alpha
Helix 7
AA7
A
141 145Right-handed 310
Helix 8
AA8
A
152 155Right-handed 310
Helix 9
AA9
A
156 175Right-handed alpha
Helix 10
AB1
A
202 206Right-handed 310
Helix 11
AB2
A
209 228Right-handed alpha
Helix 12
AB3
A
237 242Right-handed alpha
Helix 13
AB4
A
263 268Right-handed alpha
Helix 14
AB5
A
290 300Right-handed alpha
Helix 15
AB6
A
301 311Right-handed alpha
Helix 16
AB7
A
326 328Right-handed 310
Helix 17
AB8
A
329 345Right-handed alpha
Helix 18
AB9
A
371 377Right-handed alpha
Helix 19
AC1
A
377 388Right-handed alpha
Helix 20
AC2
A
399 417Right-handed alpha
Helix 21
AC3
A
422 435Right-handed alpha
Helix 22
AC4
A
436 450Right-handed alpha
Helix 23
AC5
A
455 464Right-handed alpha
Helix 24
AC6
A
465 469Right-handed 310
Helix 25
AC7
A
474 484Right-handed alpha
Helix 26
AC8
B
33 38Right-handed alpha
Helix 27
AC9
B
42 55Right-handed alpha
Helix 28
AD1
B
55 71Right-handed alpha
Helix 29
AD2
B
72 82Right-handed alpha
Helix 30
AD3
B
94 96Right-handed 310
Helix 31
AD4
B
106 123Right-handed alpha
Helix 32
AD5
B
141 145Right-handed 310
Helix 33
AD6
B
152 155Right-handed 310
Helix 34
AD7
B
156 175Right-handed alpha
Helix 35
AD8
B
202 206Right-handed 310
Helix 36
AD9
B
209 228Right-handed alpha
Helix 37
AE1
B
237 242Right-handed alpha
Helix 38
AE2
B
263 268Right-handed alpha
Helix 39
AE3
B
290 300Right-handed alpha
Helix 40
AE4
B
301 311Right-handed alpha
Helix 41
AE5
B
326 328Right-handed 310
Helix 42
AE6
B
329 347Right-handed alpha
Helix 43
AE7
B
371 377Right-handed alpha
Helix 44
AE8
B
377 388Right-handed alpha
Helix 45
AE9
B
399 417Right-handed alpha
Helix 46
AF1
B
422 435Right-handed alpha
Helix 47
AF2
B
437 443Right-handed alpha
Helix 48
AF3
B
443 450Right-handed alpha
Helix 49
AF4
B
455 464Right-handed alpha
Helix 50
AF5
B
465 469Right-handed 310
Helix 51
AF6
B
474 484Right-handed alpha
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There are 8 sheets in PDB entry 9KUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
10 12anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
86 92parallel
Strand 3
A
126 133parallel
Strand 4
A
180 184parallel
Strand 5
A
232 236parallel
Strand 6
A
255 260parallel
Strand 7
A
314 318parallel
Strand 8
A
350 353parallel
Strand 9
A
22 25parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
287 289anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
365 367parallel
Strand 3
A
471 473anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
10 12anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
86 92parallel
Strand 3
B
126 133parallel
Strand 4
B
180 184parallel
Strand 5
B
232 236parallel
Strand 6
B
255 260parallel
Strand 7
B
314 318parallel
Strand 8
B
350 353parallel
Strand 9
B
22 25parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 276first strand
Strand 2
B
287 289anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
365 367parallel
Strand 3
B
471 473anti-parallel
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