Analysis of interatomic Contacts of Structural Units in PDB entry:
9KUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KUJ entry

There are 2 chains in PDB entry 9KUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 326
B
 MET 1PRO 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9KUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
103 105Right-handed 310
Helix 4
AA4
A
113 133Right-handed alpha
Helix 5
AA5
A
150 163Right-handed alpha
Helix 6
AA6
A
173 183Right-handed alpha
Helix 7
AA7
A
195 204Right-handed alpha
Helix 8
AA8
A
220 227Right-handed alpha
Helix 9
AA9
A
249 255Right-handed alpha
Helix 10
AB1
A
264 269Right-handed alpha
Helix 11
AB2
A
271 288Right-handed alpha
Helix 12
AB3
A
296 298Right-handed 310
Helix 13
AB4
A
305 315Right-handed alpha
Helix 14
AB5
B
12 14Right-handed 310
Helix 15
AB6
B
41 49Right-handed alpha
Helix 16
AB7
B
113 133Right-handed alpha
Helix 17
AB8
B
150 163Right-handed alpha
Helix 18
AB9
B
173 183Right-handed alpha
Helix 19
AC1
B
195 204Right-handed alpha
Helix 20
AC2
B
220 227Right-handed alpha
Helix 21
AC3
B
249 255Right-handed alpha
Helix 22
AC4
B
264 269Right-handed alpha
Helix 23
AC5
B
271 288Right-handed alpha
Helix 24
AC6
B
296 298Right-handed 310
Helix 25
AC7
B
305 315Right-handed alpha
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There are 7 sheets in PDB entry 9KUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
16 21anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
30 40anti-parallel
Strand 3
A
64 71anti-parallel
Strand 4
A
83 86anti-parallel
Strand 5
A
106 107anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
30 40anti-parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
300 302parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
166 171parallel
Strand 3
A
142 145parallel
Strand 4
A
209 214parallel
Strand 5
A
228 236parallel
Strand 6
A
259 261parallel
Strand 7
B
259 261anti-parallel
Strand 8
B
228 236parallel
Strand 9
B
209 214parallel
Strand 10
B
142 145parallel
Strand 11
B
166 171parallel
Strand 12
B
187 190parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
16 21anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
30 40anti-parallel
Strand 3
B
64 71anti-parallel
Strand 4
B
83 86anti-parallel
Strand 5
B
105 107anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
30 40anti-parallel
Strand 3
B
322 325anti-parallel
Strand 4
B
300 302parallel
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