Analysis of interatomic Contacts of Structural Units in PDB entry:
9KUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KUS entry

There are 2 chains in PDB entry 9KUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24LYS 391
B
 ALA 24LYS 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9KUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 40Right-handed alpha
Helix 2
AA2
A
42 54Right-handed alpha
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
70 76Right-handed alpha
Helix 5
AA5
A
88 103Right-handed alpha
Helix 6
AA6
A
128 131Right-handed 310
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
153 161Right-handed alpha
Helix 9
AA9
A
162 167Right-handed alpha
Helix 10
AB1
A
168 170Right-handed 310
Helix 11
AB2
A
171 179Right-handed alpha
Helix 12
AB3
A
181 188Right-handed alpha
Helix 13
AB4
A
193 197Right-handed 310
Helix 14
AB5
A
198 222Right-handed alpha
Helix 15
AB6
A
226 231Right-handed 310
Helix 16
AB7
A
242 252Right-handed alpha
Helix 17
AB8
A
262 267Right-handed alpha
Helix 18
AB9
A
297 301Right-handed 310
Helix 19
AC1
A
302 317Right-handed alpha
Helix 20
AC2
A
335 337Right-handed 310
Helix 21
AC3
A
338 350Right-handed alpha
Helix 22
AC4
A
359 371Right-handed alpha
Helix 23
AC5
B
26 40Right-handed alpha
Helix 24
AC6
B
42 54Right-handed alpha
Helix 25
AC7
B
55 62Right-handed alpha
Helix 26
AC8
B
70 78Right-handed alpha
Helix 27
AC9
B
88 103Right-handed alpha
Helix 28
AD1
B
128 131Right-handed 310
Helix 29
AD2
B
140 144Right-handed 310
Helix 30
AD3
B
153 161Right-handed alpha
Helix 31
AD4
B
162 167Right-handed alpha
Helix 32
AD5
B
168 170Right-handed 310
Helix 33
AD6
B
171 179Right-handed alpha
Helix 34
AD7
B
183 188Right-handed alpha
Helix 35
AD8
B
193 197Right-handed 310
Helix 36
AD9
B
198 222Right-handed alpha
Helix 37
AE1
B
226 231Right-handed 310
Helix 38
AE2
B
242 252Right-handed alpha
Helix 39
AE3
B
262 267Right-handed alpha
Helix 40
AE4
B
297 301Right-handed 310
Helix 41
AE5
B
304 317Right-handed alpha
Helix 42
AE6
B
335 337Right-handed 310
Helix 43
AE7
B
338 350Right-handed alpha
Helix 44
AE8
B
359 371Right-handed alpha
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There are 4 sheets in PDB entry 9KUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
133 137anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
256 261parallel
Strand 3
A
233 237parallel
Strand 4
A
291 295parallel
Strand 5
A
322 327parallel
Strand 6
A
384 390anti-parallel
Strand 7
A
374 381anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 110first strand
Strand 2
B
133 137anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 279first strand
Strand 2
B
256 261parallel
Strand 3
B
233 237parallel
Strand 4
B
291 295parallel
Strand 5
B
322 327parallel
Strand 6
B
384 390anti-parallel
Strand 7
B
374 381anti-parallel
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