Analysis of interatomic Contacts of Structural Units in PDB entry:
9KV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KV8 entry

There are 6 chains in PDB entry 9KV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 17	ILE 443
D	ARG 9	ARG 21
A	SER 6	TYR 354
B	GLU 3	ASN 340
G	ALA 7	ARG 62
H	ASP 1	LEU 247

There are 27 helices in PDB entry 9KV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	20	49	Right-handed alpha
Helix 2	AA2	C	57	84	Right-handed alpha
Helix 3	AA3	C	92	126	Right-handed alpha
Helix 4	AA4	C	126	134	Right-handed alpha
Helix 5	AA5	C	135	160	Right-handed alpha
Helix 6	AA6	C	323	338	Right-handed alpha
Helix 7	AA7	C	338	358	Right-handed alpha
Helix 8	AA8	C	364	396	Right-handed alpha
Helix 9	AA9	C	400	429	Right-handed alpha
Helix 10	AB1	C	432	443	Right-handed alpha
Helix 11	AB2	D	10	16	Right-handed alpha
Helix 12	AB3	A	8	32	Right-handed alpha
Helix 13	AB4	A	45	53	Right-handed alpha
Helix 14	AB5	A	208	219	Right-handed 310
Helix 15	AB6	A	246	256	Right-handed alpha
Helix 16	AB7	A	271	282	Right-handed alpha
Helix 17	AB8	A	283	287	Right-handed 310
Helix 18	AB9	A	296	310	Right-handed alpha
Helix 19	AC1	A	330	351	Right-handed alpha
Helix 20	AC2	B	4	25	Right-handed alpha
Helix 21	AC3	B	29	35	Right-handed alpha
Helix 22	AC4	G	8	24	Right-handed alpha
Helix 23	AC5	G	29	44	Right-handed alpha
Helix 24	AC6	G	45	48	Right-handed 310
Helix 25	AC7	H	28	32	Right-handed 310
Helix 26	AC8	H	53	56	Right-handed 310
Helix 27	AC9	H	87	91	Right-handed 310

There are 13 sheets in PDB entry 9KV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	173	174	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	221	227	parallel
Strand 5	A	264	270	parallel
Strand 6	A	320	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	221	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	240	242	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	159	first strand
Strand 2	H	211	216	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	195	first strand
Strand 2	H	186	190	anti-parallel
Strand 3	H	174	179	anti-parallel
Strand 4	H	225	231	anti-parallel
Strand 5	H	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KV8