Analysis of interatomic Contacts of Structural Units in PDB entry:
9KVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KVC entry

There are 3 chains in PDB entry 9KVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 329
B
 MET 1ARG 329
C
 MET 1ARG 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9KVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 22Right-handed alpha
Helix 2
AA2
A
22 30Right-handed alpha
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
50 68Right-handed alpha
Helix 5
AA5
A
81 83Right-handed 310
Helix 6
AA6
A
84 97Right-handed alpha
Helix 7
AA7
A
98 106Right-handed alpha
Helix 8
AA8
A
121 136Right-handed alpha
Helix 9
AA9
A
145 147Right-handed 310
Helix 10
AB1
A
148 166Right-handed alpha
Helix 11
AB2
A
200 204Right-handed 310
Helix 12
AB3
A
210 221Right-handed alpha
Helix 13
AB4
A
236 251Right-handed alpha
Helix 14
AB5
A
253 261Right-handed alpha
Helix 15
AB6
A
265 293Right-handed alpha
Helix 16
AB7
A
294 324Right-handed alpha
Helix 17
AB8
B
15 22Right-handed alpha
Helix 18
AB9
B
22 30Right-handed alpha
Helix 19
AC1
B
40 45Right-handed alpha
Helix 20
AC2
B
50 68Right-handed alpha
Helix 21
AC3
B
81 83Right-handed 310
Helix 22
AC4
B
84 95Right-handed alpha
Helix 23
AC5
B
98 107Right-handed alpha
Helix 24
AC6
B
121 136Right-handed alpha
Helix 25
AC7
B
145 147Right-handed 310
Helix 26
AC8
B
148 166Right-handed alpha
Helix 27
AC9
B
200 204Right-handed 310
Helix 28
AD1
B
210 220Right-handed alpha
Helix 29
AD2
B
236 251Right-handed alpha
Helix 30
AD3
B
253 261Right-handed alpha
Helix 31
AD4
B
265 294Right-handed alpha
Helix 32
AD5
B
296 324Right-handed alpha
Helix 33
AD6
C
15 22Right-handed alpha
Helix 34
AD7
C
22 30Right-handed alpha
Helix 35
AD8
C
40 45Right-handed alpha
Helix 36
AD9
C
50 68Right-handed alpha
Helix 37
AE1
C
84 96Right-handed alpha
Helix 38
AE2
C
98 104Right-handed alpha
Helix 39
AE3
C
121 137Right-handed alpha
Helix 40
AE4
C
145 147Right-handed 310
Helix 41
AE5
C
148 166Right-handed alpha
Helix 42
AE6
C
200 204Right-handed 310
Helix 43
AE7
C
210 219Right-handed alpha
Helix 44
AE8
C
236 251Right-handed alpha
Helix 45
AE9
C
253 261Right-handed alpha
Helix 46
AF1
C
265 293Right-handed alpha
Helix 47
AF2
C
295 324Right-handed alpha
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There are 7 sheets in PDB entry 9KVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
34 39parallel
Strand 3
A
75 79parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
189 193anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
33 39parallel
Strand 3
B
76 79parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
174 175parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 8first strand
Strand 2
C
33 39parallel
Strand 3
C
76 79parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 142first strand
Strand 2
C
174 175parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 186first strand
Strand 2
C
189 193anti-parallel
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