Analysis of interatomic Contacts of Structural Units in PDB entry:
9KVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KVF entry

There are 7 chains in PDB entry 9KVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	VAL 110
G	GLU 324	PRO 589
F	GLU 1	SER 128
E	SER 2	LEU 110
B	VAL 2	VAL 120
C	VAL 2	VAL 119
D	ASP 1	LYS 107

There are 15 helices in PDB entry 9KVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	338	343	Right-handed alpha
Helix 2	AA2	G	349	353	Right-handed 310
Helix 3	AA3	G	365	370	Right-handed alpha
Helix 4	AA4	G	405	408	Right-handed 310
Helix 5	AA5	G	417	422	Right-handed alpha
Helix 6	AA6	G	438	443	Right-handed alpha
Helix 7	AA7	G	502	505	Right-handed 310
Helix 8	AA8	F	87	91	Right-handed 310
Helix 9	AA9	E	28	32	Right-handed 310
Helix 10	AB1	E	80	84	Right-handed 310
Helix 11	AB2	B	28	32	Right-handed 310
Helix 12	AB3	B	87	91	Right-handed 310
Helix 13	AB4	C	28	30	Right-handed 310
Helix 14	AB5	C	87	91	Right-handed 310
Helix 15	AB6	D	79	83	Right-handed 310

There are 21 sheets in PDB entry 9KVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	73	77	anti-parallel
Strand 4	A	64	66	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	106	108	parallel
Strand 3	A	88	94	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	46	49	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	106	108	parallel
Strand 3	A	88	94	anti-parallel
Strand 4	A	100	102	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	328	first strand
Strand 2	G	538	543	parallel
Strand 3	G	546	554	anti-parallel
Strand 4	G	584	588	anti-parallel
Strand 5	G	573	577	anti-parallel
Strand 6	G	565	567	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	358	first strand
Strand 2	G	394	403	anti-parallel
Strand 3	G	507	516	anti-parallel
Strand 4	G	431	437	anti-parallel
Strand 5	G	376	378	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	361	362	first strand
Strand 2	G	524	525	parallel
Strand 3	G	391	392	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	454	first strand
Strand 2	G	492	494	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	473	474	first strand
Strand 2	G	488	489	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	43	51	anti-parallel
Strand 6	F	59	60	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	105	109	parallel
Strand 3	E	86	93	anti-parallel
Strand 4	E	35	39	anti-parallel
Strand 5	E	46	49	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	105	109	parallel
Strand 3	E	86	93	anti-parallel
Strand 4	E	98	101	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	23	first strand
Strand 2	E	71	77	anti-parallel
Strand 3	E	63	68	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	78	84	anti-parallel
Strand 3	B	68	73	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	34	39	anti-parallel
Strand 4	B	92	98	anti-parallel
Strand 5	B	116	118	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	32	39	anti-parallel
Strand 4	C	92	101	anti-parallel
Strand 5	C	106	107	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	32	39	anti-parallel
Strand 4	C	92	101	anti-parallel
Strand 5	C	117	119	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	34	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KVF