Analysis of interatomic Contacts of Structural Units in PDB entry:
9KVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KVG entry

There are 5 chains in PDB entry 9KVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	GLN 14	ASN 345
E	VAL 1	LEU 247
G	ALA 9	ARG 61
R	SER 34	ILE 415

There are 33 helices in PDB entry 9KVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed 310
Helix 4	AA4	A	228	231	Right-handed 310
Helix 5	AA5	A	235	239	Right-handed 310
Helix 6	AA6	A	241	255	Right-handed alpha
Helix 7	AA7	A	256	260	Right-handed 310
Helix 8	AA8	A	270	279	Right-handed alpha
Helix 9	AA9	A	282	286	Right-handed 310
Helix 10	AB1	A	295	310	Right-handed alpha
Helix 11	AB2	A	329	351	Right-handed alpha
Helix 12	AB3	B	16	30	Right-handed alpha
Helix 13	AB4	B	34	39	Right-handed alpha
Helix 14	AB5	B	40	42	Right-handed 310
Helix 15	AB6	E	52	55	Right-handed 310
Helix 16	AB7	E	86	90	Right-handed 310
Helix 17	AB8	E	220	224	Right-handed 310
Helix 18	AB9	G	10	19	Right-handed alpha
Helix 19	AC1	G	19	24	Right-handed alpha
Helix 20	AC2	G	28	43	Right-handed alpha
Helix 21	AC3	G	44	47	Right-handed 310
Helix 22	AC4	G	54	58	Right-handed 310
Helix 23	AC5	R	35	64	Right-handed alpha
Helix 24	AC6	R	69	99	Right-handed alpha
Helix 25	AC7	R	105	140	Right-handed alpha
Helix 26	AC8	R	140	146	Right-handed alpha
Helix 27	AC9	R	149	169	Right-handed alpha
Helix 28	AD1	R	169	174	Right-handed alpha
Helix 29	AD2	R	192	204	Right-handed alpha
Helix 30	AD3	R	204	228	Right-handed alpha
Helix 31	AD4	R	326	371	Right-handed alpha
Helix 32	AD5	R	378	401	Right-handed alpha
Helix 33	AD6	R	404	415	Right-handed alpha

There are 12 sheets in PDB entry 9KVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	341	344	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	93	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	265	269	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	114	118	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	32	38	anti-parallel
Strand 5	E	44	50	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	142	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	207	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	243	246	parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	186	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KVG