Analysis of interatomic Contacts of Structural Units in PDB entry:
9KVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KVY entry

There are 2 chains in PDB entry 9KVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10PRO 417
B
 THR 8PRO 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9KVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 33Right-handed alpha
Helix 2
AA2
A
34 62Right-handed alpha
Helix 3
AA3
A
73 75Right-handed 310
Helix 4
AA4
A
76 106Right-handed alpha
Helix 5
AA5
A
112 133Right-handed alpha
Helix 6
AA6
A
244 264Right-handed alpha
Helix 7
AA7
A
274 307Right-handed alpha
Helix 8
AA8
A
315 325Right-handed alpha
Helix 9
AA9
A
359 374Right-handed alpha
Helix 10
AB1
A
406 410Right-handed 310
Helix 11
AB2
B
9 23Right-handed alpha
Helix 12
AB3
B
24 26Right-handed 310
Helix 13
AB4
B
33 37Right-handed 310
Helix 14
AB5
B
41 62Right-handed alpha
Helix 15
AB6
B
73 75Right-handed 310
Helix 16
AB7
B
76 106Right-handed alpha
Helix 17
AB8
B
112 132Right-handed alpha
Helix 18
AB9
B
233 265Right-handed alpha
Helix 19
AC1
B
274 306Right-handed alpha
Helix 20
AC2
B
315 326Right-handed alpha
Helix 21
AC3
B
359 373Right-handed alpha
Helix 22
AC4
B
407 412Right-handed 310
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There are 4 sheets in PDB entry 9KVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 341first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
377 378parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 341first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
381 384parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 332first strand
Strand 2
B
350 352anti-parallel
Strand 3
B
381 382parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 341first strand
Strand 2
B
344 347anti-parallel
Strand 3
B
377 378parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il