Analysis of interatomic Contacts of Structural Units in PDB entry:
9KVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KVZ entry

There are 2 chains in PDB entry 9KVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 10PRO 417
A
 ARG 10PRO 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9KVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 33Right-handed alpha
Helix 2
AA2
B
34 61Right-handed alpha
Helix 3
AA3
B
76 104Right-handed alpha
Helix 4
AA4
B
112 133Right-handed alpha
Helix 5
AA5
B
244 265Right-handed alpha
Helix 6
AA6
B
274 277Right-handed 310
Helix 7
AA7
B
278 307Right-handed alpha
Helix 8
AA8
B
315 326Right-handed alpha
Helix 9
AA9
B
359 373Right-handed alpha
Helix 10
AB1
B
406 413Right-handed 310
Helix 11
AB2
A
12 33Right-handed alpha
Helix 12
AB3
A
34 61Right-handed alpha
Helix 13
AB4
A
76 106Right-handed alpha
Helix 14
AB5
A
112 133Right-handed alpha
Helix 15
AB6
A
244 265Right-handed alpha
Helix 16
AB7
A
274 277Right-handed 310
Helix 17
AB8
A
278 307Right-handed alpha
Helix 18
AB9
A
315 326Right-handed alpha
Helix 19
AC1
A
359 373Right-handed alpha
Helix 20
AC2
A
395 399Right-handed 310
Helix 21
AC3
A
406 413Right-handed 310
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There are 2 sheets in PDB entry 9KVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 341first strand
Strand 2
B
344 353anti-parallel
Strand 3
B
377 384parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 341first strand
Strand 2
A
344 354anti-parallel
Strand 3
A
377 385parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il