Analysis of interatomic Contacts of Structural Units in PDB entry:
9KW6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KW6 entry

There are 4 chains in PDB entry 9KW6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	ARG 288
B	ALA 0	ARG 288
C	ALA 0	ARG 288
D	MET 2	ARG 288

There are 37 helices in PDB entry 9KW6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	21	Right-handed alpha
Helix 2	AA2	A	22	29	Right-handed alpha
Helix 3	AA3	A	47	61	Right-handed alpha
Helix 4	AA4	A	91	99	Right-handed alpha
Helix 5	AA5	A	137	141	Right-handed 310
Helix 6	AA6	A	164	182	Right-handed alpha
Helix 7	AA7	A	184	190	Right-handed alpha
Helix 8	AA8	A	209	224	Right-handed alpha
Helix 9	AA9	A	279	281	Right-handed 310
Helix 10	AB1	B	2	21	Right-handed alpha
Helix 11	AB2	B	22	28	Right-handed alpha
Helix 12	AB3	B	47	61	Right-handed alpha
Helix 13	AB4	B	92	99	Right-handed alpha
Helix 14	AB5	B	137	141	Right-handed 310
Helix 15	AB6	B	170	182	Right-handed alpha
Helix 16	AB7	B	184	190	Right-handed alpha
Helix 17	AB8	B	209	223	Right-handed alpha
Helix 18	AB9	B	279	281	Right-handed 310
Helix 19	AC1	C	3	21	Right-handed alpha
Helix 20	AC2	C	22	29	Right-handed alpha
Helix 21	AC3	C	47	61	Right-handed alpha
Helix 22	AC4	C	92	99	Right-handed alpha
Helix 23	AC5	C	137	141	Right-handed 310
Helix 24	AC6	C	167	183	Right-handed alpha
Helix 25	AC7	C	184	190	Right-handed alpha
Helix 26	AC8	C	209	223	Right-handed alpha
Helix 27	AC9	C	279	281	Right-handed 310
Helix 28	AD1	D	3	21	Right-handed alpha
Helix 29	AD2	D	22	29	Right-handed alpha
Helix 30	AD3	D	47	61	Right-handed alpha
Helix 31	AD4	D	92	99	Right-handed alpha
Helix 32	AD5	D	137	139	Right-handed 310
Helix 33	AD6	D	165	170	Right-handed alpha
Helix 34	AD7	D	170	182	Right-handed alpha
Helix 35	AD8	D	184	190	Right-handed alpha
Helix 36	AD9	D	209	223	Right-handed alpha
Helix 37	AE1	D	279	281	Right-handed 310

There are 16 sheets in PDB entry 9KW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	30	37	anti-parallel
Strand 3	A	129	135	parallel
Strand 4	A	112	123	anti-parallel
Strand 5	A	78	88	anti-parallel
Strand 6	A	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	30	37	anti-parallel
Strand 3	A	129	135	parallel
Strand 4	A	112	123	anti-parallel
Strand 5	A	78	88	anti-parallel
Strand 6	A	71	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	192	199	anti-parallel
Strand 3	A	271	277	parallel
Strand 4	A	255	265	anti-parallel
Strand 5	A	240	249	anti-parallel
Strand 6	A	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	240	249	anti-parallel
Strand 3	A	255	265	anti-parallel
Strand 4	A	283	285	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	30	37	anti-parallel
Strand 3	B	129	135	parallel
Strand 4	B	112	123	anti-parallel
Strand 5	B	78	88	anti-parallel
Strand 6	B	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	30	37	anti-parallel
Strand 3	B	129	135	parallel
Strand 4	B	112	123	anti-parallel
Strand 5	B	78	88	anti-parallel
Strand 6	B	71	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	192	199	anti-parallel
Strand 3	B	271	277	parallel
Strand 4	B	255	265	anti-parallel
Strand 5	B	240	249	anti-parallel
Strand 6	B	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	240	249	anti-parallel
Strand 3	B	255	265	anti-parallel
Strand 4	B	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	30	37	anti-parallel
Strand 3	C	129	135	parallel
Strand 4	C	112	123	anti-parallel
Strand 5	C	78	88	anti-parallel
Strand 6	C	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	30	37	anti-parallel
Strand 3	C	129	135	parallel
Strand 4	C	112	123	anti-parallel
Strand 5	C	78	88	anti-parallel
Strand 6	C	71	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	192	199	anti-parallel
Strand 3	C	271	277	parallel
Strand 4	C	255	265	anti-parallel
Strand 5	C	240	249	anti-parallel
Strand 6	C	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	240	249	anti-parallel
Strand 3	C	255	265	anti-parallel
Strand 4	C	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	30	37	anti-parallel
Strand 3	D	129	135	parallel
Strand 4	D	112	123	anti-parallel
Strand 5	D	78	88	anti-parallel
Strand 6	D	71	72	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	67	first strand
Strand 2	D	78	88	anti-parallel
Strand 3	D	112	123	anti-parallel
Strand 4	D	141	142	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	192	199	anti-parallel
Strand 3	D	271	277	parallel
Strand 4	D	255	265	anti-parallel
Strand 5	D	240	249	anti-parallel
Strand 6	D	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	229	first strand
Strand 2	D	240	249	anti-parallel
Strand 3	D	255	265	anti-parallel
Strand 4	D	283	284	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KW6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KW6