Analysis of interatomic Contacts of Structural Units in PDB entry:
9KWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KWA entry

There are 2 chains in PDB entry 9KWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -4THR 358
B
 ASN -5THR 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9KWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 22Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
64 72Right-handed alpha
Helix 4
AA4
A
82 98Right-handed alpha
Helix 5
AA5
A
113 124Right-handed alpha
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
144 169Right-handed alpha
Helix 8
AA8
A
174 189Right-handed alpha
Helix 9
AA9
A
245 266Right-handed alpha
Helix 10
AB1
A
271 286Right-handed alpha
Helix 11
AB2
A
288 292Right-handed 310
Helix 12
AB3
B
4 22Right-handed alpha
Helix 13
AB4
B
31 40Right-handed alpha
Helix 14
AB5
B
64 72Right-handed alpha
Helix 15
AB6
B
82 97Right-handed alpha
Helix 16
AB7
B
113 124Right-handed alpha
Helix 17
AB8
B
132 141Right-handed alpha
Helix 18
AB9
B
144 169Right-handed alpha
Helix 19
AC1
B
174 189Right-handed alpha
Helix 20
AC2
B
245 266Right-handed alpha
Helix 21
AC3
B
271 286Right-handed alpha
Helix 22
AC4
B
288 292Right-handed 310
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There are 8 sheets in PDB entry 9KWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
57 61parallel
Strand 3
A
48 51anti-parallel
Strand 4
A
26 29anti-parallel
Strand 5
A
101 104parallel
Strand 6
A
128 131parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
218 228anti-parallel
Strand 3
A
231 241anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
326 329anti-parallel
Strand 3
A
345 349anti-parallel
Strand 4
A
354 356anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
339 341anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
57 61parallel
Strand 3
B
48 51anti-parallel
Strand 4
B
26 29anti-parallel
Strand 5
B
101 104parallel
Strand 6
B
128 131parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 199first strand
Strand 2
B
218 228anti-parallel
Strand 3
B
231 241anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
326 329anti-parallel
Strand 3
B
345 349anti-parallel
Strand 4
B
354 356anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
339 341anti-parallel
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