Analysis of interatomic Contacts of Structural Units in PDB entry:
9KWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KWB entry

There are 3 chains in PDB entry 9KWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 1226
B
 A 3 U 29
C
 A 31 C 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 9KWB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
A
37 66Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
91 110Right-handed alpha
Helix 6
AA6
A
115 119Right-handed 310
Helix 7
AA7
A
121 126Right-handed alpha
Helix 8
AA8
A
126 132Right-handed alpha
Helix 9
AA9
A
134 143Right-handed alpha
Helix 10
AB1
A
147 150Right-handed 310
Helix 11
AB2
A
151 159Right-handed alpha
Helix 12
AB3
A
170 176Right-handed alpha
Helix 13
AB4
A
192 196Right-handed 310
Helix 14
AB5
A
198 209Right-handed alpha
Helix 15
AB6
A
233 242Right-handed alpha
Helix 16
AB7
A
255 265Right-handed alpha
Helix 17
AB8
A
308 324Right-handed alpha
Helix 18
AB9
A
324 331Right-handed alpha
Helix 19
AC1
A
341 352Right-handed alpha
Helix 20
AC2
A
356 370Right-handed alpha
Helix 21
AC3
A
378 392Right-handed alpha
Helix 22
AC4
A
397 403Right-handed alpha
Helix 23
AC5
A
409 431Right-handed alpha
Helix 24
AC6
A
432 437Right-handed alpha
Helix 25
AC7
A
449 472Right-handed alpha
Helix 26
AC8
A
488 499Right-handed alpha
Helix 27
AC9
A
499 512Right-handed alpha
Helix 28
AD1
A
535 539Right-handed 310
Helix 29
AD2
A
564 569Right-handed alpha
Helix 30
AD3
A
588 599Right-handed alpha
Helix 31
AD4
A
609 619Right-handed alpha
Helix 32
AD5
A
628 645Right-handed alpha
Helix 33
AD6
A
646 651Right-handed alpha
Helix 34
AD7
A
665 676Right-handed alpha
Helix 35
AD8
A
687 697Right-handed alpha
Helix 36
AD9
A
706 710Right-handed 310
Helix 37
AE1
A
718 728Right-handed alpha
Helix 38
AE2
A
752 756Right-handed 310
Helix 39
AE3
A
786 790Right-handed 310
Helix 40
AE4
A
811 822Right-handed alpha
Helix 41
AE5
A
872 885Right-handed alpha
Helix 42
AE6
A
889 919Right-handed alpha
Helix 43
AE7
A
939 954Right-handed alpha
Helix 44
AE8
A
1020 1030Right-handed alpha
Helix 45
AE9
A
1050 1052Right-handed 310
Helix 46
AF1
A
1091 1102Right-handed alpha
Helix 47
AF2
A
1111 1117Right-handed alpha
Helix 48
AF3
A
1120 1136Right-handed alpha
Helix 49
AF4
A
1163 1167Right-handed 310
Helix 50
AF5
A
1178 1201Right-handed alpha
Helix 51
AF6
A
1202 1206Right-handed 310
Helix 52
AF7
A
1214 1226Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9KWB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 523first strand
Strand 2
A
743 747anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
699 705anti-parallel
Strand 6
A
552 558anti-parallel
Strand 7
A
544 549anti-parallel
Strand 8
A
577 585anti-parallel
Strand 9
A
678 686anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 523first strand
Strand 2
A
743 747anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
736 738anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
394 396anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 759first strand
Strand 2
A
783 784anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 855first strand
Strand 2
A
840 844anti-parallel
Strand 3
A
828 832anti-parallel
Strand 4
A
921 925parallel
Strand 5
A
993 996parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 863first strand
Strand 2
A
866 871anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1034first strand
Strand 2
A
1044 1048anti-parallel
Strand 3
A
1062 1066anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1072first strand
Strand 2
A
1088 1090anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1140first strand
Strand 2
A
1148 1150anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il