Analysis of interatomic Contacts of Structural Units in PDB entry:
9KWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KWC entry

There are 2 chains in PDB entry 9KWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 1226
G
 A 3 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9KWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
A
37 69Right-handed alpha
Helix 4
AA4
A
91 109Right-handed alpha
Helix 5
AA5
A
114 119Right-handed alpha
Helix 6
AA6
A
121 126Right-handed alpha
Helix 7
AA7
A
126 132Right-handed alpha
Helix 8
AA8
A
134 144Right-handed alpha
Helix 9
AA9
A
151 161Right-handed alpha
Helix 10
AB1
A
172 177Right-handed alpha
Helix 11
AB2
A
190 196Right-handed 310
Helix 12
AB3
A
201 209Right-handed alpha
Helix 13
AB4
A
210 214Right-handed 310
Helix 14
AB5
A
233 238Right-handed alpha
Helix 15
AB6
A
255 260Right-handed alpha
Helix 16
AB7
A
308 323Right-handed alpha
Helix 17
AB8
A
326 333Right-handed alpha
Helix 18
AB9
A
341 352Right-handed alpha
Helix 19
AC1
A
356 371Right-handed alpha
Helix 20
AC2
A
378 392Right-handed alpha
Helix 21
AC3
A
396 403Right-handed alpha
Helix 22
AC4
A
409 430Right-handed alpha
Helix 23
AC5
A
432 437Right-handed alpha
Helix 24
AC6
A
449 472Right-handed alpha
Helix 25
AC7
A
488 497Right-handed alpha
Helix 26
AC8
A
498 512Right-handed alpha
Helix 27
AC9
A
559 563Right-handed 310
Helix 28
AD1
A
564 569Right-handed alpha
Helix 29
AD2
A
687 697Right-handed alpha
Helix 30
AD3
A
706 710Right-handed 310
Helix 31
AD4
A
718 728Right-handed alpha
Helix 32
AD5
A
752 756Right-handed 310
Helix 33
AD6
A
787 791Right-handed 310
Helix 34
AD7
A
811 823Right-handed alpha
Helix 35
AD8
A
872 885Right-handed alpha
Helix 36
AD9
A
886 888Right-handed 310
Helix 37
AE1
A
889 919Right-handed alpha
Helix 38
AE2
A
939 954Right-handed alpha
Helix 39
AE3
A
1020 1030Right-handed alpha
Helix 40
AE4
A
1091 1103Right-handed alpha
Helix 41
AE5
A
1111 1118Right-handed alpha
Helix 42
AE6
A
1120 1136Right-handed alpha
Helix 43
AE7
A
1163 1170Right-handed alpha
Helix 44
AE8
A
1178 1201Right-handed alpha
Helix 45
AE9
A
1202 1206Right-handed 310
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There are 8 sheets in PDB entry 9KWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
552 556anti-parallel
Strand 3
A
702 705anti-parallel
Strand 4
A
14 23anti-parallel
Strand 5
A
794 801anti-parallel
Strand 6
A
737 738anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
552 556anti-parallel
Strand 3
A
702 705anti-parallel
Strand 4
A
14 23anti-parallel
Strand 5
A
794 801anti-parallel
Strand 6
A
743 744anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 583first strand
Strand 2
A
680 681anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 844first strand
Strand 2
A
850 854anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 862first strand
Strand 2
A
867 871anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1037first strand
Strand 2
A
1042 1048anti-parallel
Strand 3
A
1062 1064anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1073first strand
Strand 2
A
1087 1090anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1139first strand
Strand 2
A
1149 1150anti-parallel
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