Analysis of interatomic Contacts of Structural Units in PDB entry:
9KWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KWD entry

There is 1 chain in PDB entry 9KWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10GLN 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9KWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 30Right-handed alpha
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
56 64Right-handed alpha
Helix 4
AA4
A
106 111Right-handed alpha
Helix 5
AA5
A
163 168Right-handed alpha
Helix 6
AA6
A
168 176Right-handed alpha
Helix 7
AA7
A
176 201Right-handed alpha
Helix 8
AA8
A
239 250Right-handed alpha
Helix 9
AA9
A
285 306Right-handed alpha
Helix 10
AB1
A
328 336Right-handed alpha
Helix 11
AB2
A
340 345Right-handed 310
Helix 12
AB3
A
346 357Right-handed alpha
Helix 13
AB4
A
366 379Right-handed alpha
Helix 14
AB5
A
380 383Right-handed 310
Helix 15
AB6
A
393 397Right-handed 310
Helix 16
AB7
A
431 447Right-handed alpha
Helix 17
AB8
A
457 466Right-handed alpha
Helix 18
AB9
A
478 486Right-handed alpha
Helix 19
AC1
A
490 494Right-handed 310
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There are 4 sheets in PDB entry 9KWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 78first strand
Strand 2
A
82 89anti-parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
135 146parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
66 78anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
253 261parallel
Strand 3
A
273 282anti-parallel
Strand 4
A
471 477anti-parallel
Strand 5
A
420 427anti-parallel
Strand 6
A
412 417anti-parallel
Strand 7
A
387 390anti-parallel
Strand 8
A
324 327parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
222 226anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
315 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il