Analysis of interatomic Contacts of Structural Units in PDB entry:
9KWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KWF entry

There are 2 chains in PDB entry 9KWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 7HIS 434
A
 THR 7HIS 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9KWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 21Right-handed alpha
Helix 2
AA2
B
40 43Right-handed 310
Helix 3
AA3
B
44 57Right-handed alpha
Helix 4
AA4
B
66 77Right-handed alpha
Helix 5
AA5
B
110 114Right-handed 310
Helix 6
AA6
B
121 125Right-handed 310
Helix 7
AA7
B
126 132Right-handed alpha
Helix 8
AA8
B
156 161Right-handed 310
Helix 9
AA9
B
179 192Right-handed alpha
Helix 10
AB1
B
198 206Right-handed alpha
Helix 11
AB2
B
221 231Right-handed alpha
Helix 12
AB3
B
245 256Right-handed alpha
Helix 13
AB4
B
389 393Right-handed alpha
Helix 14
AB5
B
404 408Right-handed alpha
Helix 15
AB6
A
8 21Right-handed alpha
Helix 16
AB7
A
40 43Right-handed 310
Helix 17
AB8
A
44 57Right-handed alpha
Helix 18
AB9
A
66 77Right-handed alpha
Helix 19
AC1
A
110 114Right-handed 310
Helix 20
AC2
A
121 125Right-handed 310
Helix 21
AC3
A
126 132Right-handed alpha
Helix 22
AC4
A
156 161Right-handed 310
Helix 23
AC5
A
179 192Right-handed alpha
Helix 24
AC6
A
198 206Right-handed alpha
Helix 25
AC7
A
221 231Right-handed alpha
Helix 26
AC8
A
245 256Right-handed alpha
Helix 27
AC9
A
389 393Right-handed alpha
Helix 28
AD1
A
404 408Right-handed alpha
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There are 10 sheets in PDB entry 9KWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
60 64parallel
Strand 3
B
116 119parallel
Strand 4
B
138 140parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
386 388parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
B
290 292anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 313first strand
Strand 2
B
317 321anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 403first strand
Strand 2
B
430 433parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
60 64parallel
Strand 3
A
116 119parallel
Strand 4
A
138 140parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
386 388parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
290 292anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 313first strand
Strand 2
A
317 321anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 403first strand
Strand 2
A
430 433parallel
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