Analysis of interatomic Contacts of Structural Units in PDB entry:
9KWY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KWY entry

There are 4 chains in PDB entry 9KWY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ASN 599
G	ASN 334	CYS 525
B	ASP 1	ASN 107
C	GLN 1	SER 119

There are 37 helices in PDB entry 9KWY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	53	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	82	83	Right-handed 310
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	90	102	Right-handed alpha
Helix 6	AA6	A	109	129	Right-handed alpha
Helix 7	AA7	A	146	154	Right-handed alpha
Helix 8	AA8	A	157	172	Right-handed alpha
Helix 9	AA9	A	176	194	Right-handed alpha
Helix 10	AB1	A	198	204	Right-handed alpha
Helix 11	AB2	A	218	252	Right-handed alpha
Helix 12	AB3	A	275	282	Right-handed 310
Helix 13	AB4	A	293	300	Right-handed alpha
Helix 14	AB5	A	303	319	Right-handed alpha
Helix 15	AB6	A	324	331	Right-handed alpha
Helix 16	AB7	A	366	386	Right-handed alpha
Helix 17	AB8	A	387	388	Right-handed 310
Helix 18	AB9	A	389	393	Right-handed 310
Helix 19	AC1	A	398	413	Right-handed alpha
Helix 20	AC2	A	414	421	Right-handed alpha
Helix 21	AC3	A	431	447	Right-handed alpha
Helix 22	AC4	A	448	466	Right-handed alpha
Helix 23	AC5	A	472	484	Right-handed alpha
Helix 24	AC6	A	499	502	Right-handed 310
Helix 25	AC7	A	503	508	Right-handed alpha
Helix 26	AC8	A	513	533	Right-handed alpha
Helix 27	AC9	A	547	559	Right-handed alpha
Helix 28	AD1	A	565	575	Right-handed alpha
Helix 29	AD2	A	581	588	Right-handed alpha
Helix 30	AD3	A	588	599	Right-handed alpha
Helix 31	AD4	G	337	343	Right-handed alpha
Helix 32	AD5	G	364	371	Right-handed alpha
Helix 33	AD6	G	385	389	Right-handed 310
Helix 34	AD7	G	405	407	Right-handed 310
Helix 35	AD8	G	416	421	Right-handed alpha
Helix 36	AD9	B	79	83	Right-handed 310
Helix 37	AE1	C	28	32	Right-handed 310

There are 13 sheets in PDB entry 9KWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	356	359	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	358	first strand
Strand 2	G	394	403	anti-parallel
Strand 3	G	507	516	anti-parallel
Strand 4	G	432	437	anti-parallel
Strand 5	G	376	379	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	454	first strand
Strand 2	G	492	494	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	473	474	first strand
Strand 2	G	488	489	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	68	71	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	46	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	73	75	anti-parallel
Strand 3	B	62	64	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	24	25	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	106	109	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	79	83	anti-parallel
Strand 3	C	68	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KWY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KWY