Analysis of interatomic Contacts of Structural Units in PDB entry:
9KXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KXX entry

There is 1 chain in PDB entry 9KXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15HIS 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9KXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
40 48Right-handed alpha
Helix 3
AA3
A
51 56Right-handed alpha
Helix 4
AA4
A
56 64Right-handed alpha
Helix 5
AA5
A
67 81Right-handed alpha
Helix 6
AA6
A
81 97Right-handed alpha
Helix 7
AA7
A
99 108Right-handed alpha
Helix 8
AA8
A
109 111Right-handed 310
Helix 9
AA9
A
112 142Right-handed alpha
Helix 10
AB1
A
163 169Right-handed alpha
Helix 11
AB2
A
170 178Right-handed alpha
Helix 12
AB3
A
194 214Right-handed alpha
Helix 13
AB4
A
214 227Right-handed alpha
Helix 14
AB5
A
228 243Right-handed alpha
Helix 15
AB6
A
246 254Right-handed alpha
Helix 16
AB7
A
258 263Right-handed alpha
Helix 17
AB8
A
266 280Right-handed alpha
Helix 18
AB9
A
284 291Right-handed alpha
Helix 19
AC1
A
298 336Right-handed alpha
Helix 20
AC2
A
385 391Right-handed alpha
Helix 21
AC3
A
397 409Right-handed alpha
Helix 22
AC4
A
412 447Right-handed alpha
Helix 23
AC5
A
454 475Right-handed alpha
Helix 24
AC6
A
477 490Right-handed alpha
Helix 25
AC7
A
491 508Right-handed alpha
Helix 26
AC8
A
510 523Right-handed alpha
Helix 27
AC9
A
527 536Right-handed alpha
Helix 28
AD1
A
536 554Right-handed alpha
Helix 29
AD2
A
581 590Right-handed alpha
Helix 30
AD3
A
591 608Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9KXX.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 562first strand
Strand 2
A
574 577anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il