Analysis of interatomic Contacts of Structural Units in PDB entry:
9KY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KY5 entry

There are 2 chains in PDB entry 9KY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 39GLU 501
B
 LYS 161ALA 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9KY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 59Right-handed alpha
Helix 2
AA2
A
70 74Right-handed 310
Helix 3
AA3
A
77 105Right-handed alpha
Helix 4
AA4
A
115 120Right-handed alpha
Helix 5
AA5
A
120 134Right-handed alpha
Helix 6
AA6
A
135 152Right-handed alpha
Helix 7
AA7
A
153 156Right-handed 310
Helix 8
AA8
A
162 184Right-handed alpha
Helix 9
AA9
A
184 218Right-handed alpha
Helix 10
AB1
A
232 245Right-handed alpha
Helix 11
AB2
A
251 255Right-handed 310
Helix 12
AB3
A
256 260Right-handed 310
Helix 13
AB4
A
265 293Right-handed alpha
Helix 14
AB5
A
294 301Right-handed alpha
Helix 15
AB6
A
303 313Right-handed alpha
Helix 16
AB7
A
318 331Right-handed alpha
Helix 17
AB8
A
338 350Right-handed alpha
Helix 18
AB9
A
353 358Right-handed 310
Helix 19
AC1
A
366 380Right-handed alpha
Helix 20
AC2
A
385 392Right-handed 310
Helix 21
AC3
A
395 415Right-handed alpha
Helix 22
AC4
A
426 446Right-handed alpha
Helix 23
AC5
A
447 460Right-handed alpha
Helix 24
AC6
A
461 469Right-handed alpha
Helix 25
AC7
A
477 495Right-handed alpha
Helix 26
AC8
B
166 173Right-handed alpha
Helix 27
AC9
B
176 206Right-handed alpha
Helix 28
AD1
B
218 222Right-handed 310
Helix 29
AD2
B
231 236Right-handed alpha
Helix 30
AD3
B
241 246Right-handed alpha
Helix 31
AD4
B
248 253Right-handed alpha
Helix 32
AD5
B
287 301Right-handed alpha
Helix 33
AD6
B
324 342Right-handed alpha
Helix 34
AD7
B
351 354Right-handed 310
Helix 35
AD8
B
356 372Right-handed alpha
Helix 36
AD9
B
385 393Right-handed alpha
Helix 37
AE1
B
412 428Right-handed alpha
Helix 38
AE2
B
447 449Right-handed 310
Helix 39
AE3
B
450 459Right-handed alpha
Helix 40
AE4
B
509 515Right-handed alpha
Helix 41
AE5
B
520 532Right-handed alpha
Helix 42
AE6
B
534 539Right-handed alpha
Helix 43
AE7
B
585 589Right-handed 310
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There are 7 sheets in PDB entry 9KY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
497 498anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
463 467parallel
Strand 3
B
432 434parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
306 307parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
377 381parallel
Strand 3
B
400 403parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 544first strand
Strand 2
B
551 557anti-parallel
Strand 3
B
563 569anti-parallel
Strand 4
B
622 627anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
575 576first strand
Strand 2
B
616 617anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
593 594first strand
Strand 2
B
610 611anti-parallel
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