Analysis of interatomic Contacts of Structural Units in PDB entry:
9KYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KYM entry

There are 4 chains in PDB entry 9KYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2THR 279
B
 ALA 2GLY 286
C
 MET 1TRP 266
D
 MET 1LYS 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9KYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 54Right-handed alpha
Helix 2
AA2
A
75 82Right-handed alpha
Helix 3
AA3
A
98 110Right-handed alpha
Helix 4
AA4
A
113 127Right-handed alpha
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
137 141Right-handed 310
Helix 7
AA7
A
142 158Right-handed alpha
Helix 8
AA8
A
172 191Right-handed alpha
Helix 9
AA9
A
200 207Right-handed alpha
Helix 10
AB1
A
223 228Right-handed alpha
Helix 11
AB2
A
232 238Right-handed alpha
Helix 12
AB3
A
242 254Right-handed alpha
Helix 13
AB4
A
264 278Right-handed alpha
Helix 14
AB5
B
46 51Right-handed alpha
Helix 15
AB6
B
76 78Right-handed 310
Helix 16
AB7
B
79 85Right-handed alpha
Helix 17
AB8
B
93 97Right-handed 310
Helix 18
AB9
B
102 108Right-handed alpha
Helix 19
AC1
B
108 115Right-handed alpha
Helix 20
AC2
B
117 132Right-handed alpha
Helix 21
AC3
B
135 140Right-handed 310
Helix 22
AC4
B
142 146Right-handed 310
Helix 23
AC5
B
147 161Right-handed alpha
Helix 24
AC6
B
177 196Right-handed alpha
Helix 25
AC7
B
205 212Right-handed alpha
Helix 26
AC8
B
229 234Right-handed alpha
Helix 27
AC9
B
236 242Right-handed alpha
Helix 28
AD1
B
248 260Right-handed alpha
Helix 29
AD2
B
270 286Right-handed alpha
Helix 30
AD3
C
15 19Right-handed 310
Helix 31
AD4
C
20 38Right-handed alpha
Helix 32
AD5
C
40 57Right-handed alpha
Helix 33
AD6
C
61 68Right-handed alpha
Helix 34
AD7
C
69 71Right-handed 310
Helix 35
AD8
C
72 84Right-handed alpha
Helix 36
AD9
C
103 129Right-handed alpha
Helix 37
AE1
C
132 145Right-handed alpha
Helix 38
AE2
C
146 151Right-handed 310
Helix 39
AE3
C
154 184Right-handed alpha
Helix 40
AE4
C
193 200Right-handed alpha
Helix 41
AE5
C
201 227Right-handed alpha
Helix 42
AE6
C
243 264Right-handed alpha
Helix 43
AE7
D
13 31Right-handed alpha
Helix 44
AE8
D
32 34Right-handed 310
Helix 45
AE9
D
45 57Right-handed alpha
Helix 46
AF1
D
57 77Right-handed alpha
Helix 47
AF2
D
81 100Right-handed alpha
Helix 48
AF3
D
105 134Right-handed alpha
Helix 49
AF4
D
136 165Right-handed alpha
Helix 50
AF5
D
165 177Right-handed alpha
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There are 5 sheets in PDB entry 9KYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
6 12anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
69 70anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
161 164parallel
Strand 3
A
193 196parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
3 4anti-parallel
Strand 3
B
64 66anti-parallel
Strand 4
B
69 71anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
166 170parallel
Strand 3
B
198 202parallel
Strand 4
B
35 39parallel
Strand 5
B
215 218parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
D
41 42anti-parallel
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