Analysis of interatomic Contacts of Structural Units in PDB entry:
9KYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KYY entry

There are 3 chains in PDB entry 9KYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 71LEU 245
B
 ARG 70LEU 245
C
 ILE 68LEU 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9KYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 85Right-handed alpha
Helix 2
AA2
A
89 93Right-handed 310
Helix 3
AA3
A
103 107Right-handed 310
Helix 4
AA4
A
109 116Right-handed alpha
Helix 5
AA5
A
119 177Right-handed alpha
Helix 6
AA6
A
181 193Right-handed alpha
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
208 218Right-handed alpha
Helix 9
AA9
A
219 229Right-handed alpha
Helix 10
AB1
A
230 245Right-handed alpha
Helix 11
AB2
B
71 86Right-handed alpha
Helix 12
AB3
B
89 93Right-handed 310
Helix 13
AB4
B
103 108Right-handed alpha
Helix 14
AB5
B
109 116Right-handed alpha
Helix 15
AB6
B
119 174Right-handed alpha
Helix 16
AB7
B
175 178Right-handed 310
Helix 17
AB8
B
181 193Right-handed alpha
Helix 18
AB9
B
194 205Right-handed alpha
Helix 19
AC1
B
208 219Right-handed alpha
Helix 20
AC2
B
219 229Right-handed alpha
Helix 21
AC3
B
230 245Right-handed alpha
Helix 22
AC4
C
69 85Right-handed alpha
Helix 23
AC5
C
104 109Right-handed alpha
Helix 24
AC6
C
109 116Right-handed alpha
Helix 25
AC7
C
119 177Right-handed alpha
Helix 26
AC8
C
179 191Right-handed alpha
Helix 27
AC9
C
194 205Right-handed alpha
Helix 28
AD1
C
210 219Right-handed alpha
Helix 29
AD2
C
220 228Right-handed alpha
Helix 30
AD3
C
230 245Right-handed alpha
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There are no sheets in PDB entry 9KYY
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il