Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KZ7 entry

There is 1 chain in PDB entry 9KZ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 54	PRO 1824

There are 45 helices in PDB entry 9KZ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	65	Right-handed 310
Helix 2	AA2	A	75	82	Right-handed alpha
Helix 3	AA3	A	322	335	Right-handed alpha
Helix 4	AA4	A	341	346	Right-handed 310
Helix 5	AA5	A	356	370	Right-handed alpha
Helix 6	AA6	A	380	384	Right-handed 310
Helix 7	AA7	A	399	410	Right-handed alpha
Helix 8	AA8	A	432	442	Right-handed alpha
Helix 9	AA9	A	470	486	Right-handed alpha
Helix 10	AB1	A	545	550	Right-handed alpha
Helix 11	AB2	A	552	569	Right-handed alpha
Helix 12	AB3	A	584	588	Right-handed 310
Helix 13	AB4	A	599	616	Right-handed alpha
Helix 14	AB5	A	633	645	Right-handed alpha
Helix 15	AB6	A	662	667	Right-handed 310
Helix 16	AB7	A	670	686	Right-handed alpha
Helix 17	AB8	A	686	701	Right-handed alpha
Helix 18	AB9	A	707	711	Right-handed 310
Helix 19	AC1	A	796	801	Right-handed alpha
Helix 20	AC2	A	926	930	Right-handed 310
Helix 21	AC3	A	941	948	Right-handed alpha
Helix 22	AC4	A	990	995	Right-handed alpha
Helix 23	AC5	A	1188	1201	Right-handed alpha
Helix 24	AC6	A	1207	1212	Right-handed 310
Helix 25	AC7	A	1222	1236	Right-handed alpha
Helix 26	AC8	A	1250	1254	Right-handed 310
Helix 27	AC9	A	1259	1263	Right-handed 310
Helix 28	AD1	A	1264	1275	Right-handed alpha
Helix 29	AD2	A	1295	1305	Right-handed alpha
Helix 30	AD3	A	1335	1343	Right-handed alpha
Helix 31	AD4	A	1354	1370	Right-handed alpha
Helix 32	AD5	A	1405	1410	Right-handed alpha
Helix 33	AD6	A	1419	1423	Right-handed 310
Helix 34	AD7	A	1445	1449	Right-handed alpha
Helix 35	AD8	A	1451	1469	Right-handed alpha
Helix 36	AD9	A	1482	1486	Right-handed 310
Helix 37	AE1	A	1499	1514	Right-handed alpha
Helix 38	AE2	A	1531	1543	Right-handed alpha
Helix 39	AE3	A	1560	1564	Right-handed 310
Helix 40	AE4	A	1565	1597	Right-handed alpha
Helix 41	AE5	A	1603	1607	Right-handed 310
Helix 42	AE6	A	1611	1617	Right-handed 310
Helix 43	AE7	A	1692	1697	Right-handed alpha
Helix 44	AE8	A	1806	1809	Right-handed 310
Helix 45	AE9	A	1811	1813	Right-handed 310

There are 22 sheets in PDB entry 9KZ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	97	98	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	113	first strand
Strand 2	A	117	124	anti-parallel
Strand 3	A	137	146	anti-parallel
Strand 4	A	149	156	anti-parallel
Strand 5	A	313	320	anti-parallel
Strand 6	A	283	288	anti-parallel
Strand 7	A	270	276	anti-parallel
Strand 8	A	230	234	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	187	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	202	206	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	303	308	anti-parallel
Strand 4	A	294	299	anti-parallel
Strand 5	A	249	252	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	622	first strand
Strand 2	A	590	592	parallel
Strand 3	A	576	578	parallel
Strand 4	A	492	495	parallel
Strand 5	A	413	418	parallel
Strand 6	A	376	379	parallel
Strand 7	A	348	351	parallel
Strand 8	A	651	654	parallel
Strand 9	A	624	625	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	423	first strand
Strand 2	A	461	464	anti-parallel
Strand 3	A	456	458	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	725	727	anti-parallel
Strand 3	A	731	734	anti-parallel
Strand 4	A	779	783	anti-parallel
Strand 5	A	753	755	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	748	first strand
Strand 2	A	767	772	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	791	first strand
Strand 2	A	805	810	anti-parallel
Strand 3	A	865	872	parallel
Strand 4	A	903	907	anti-parallel
Strand 5	A	894	898	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	791	first strand
Strand 2	A	805	810	anti-parallel
Strand 3	A	865	872	parallel
Strand 4	A	911	912	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	817	823	first strand
Strand 2	A	838	845	anti-parallel
Strand 3	A	848	856	anti-parallel
Strand 4	A	917	923	anti-parallel
Strand 5	A	877	884	anti-parallel
Strand 6	A	887	888	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	951	952	first strand
Strand 2	A	963	964	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	970	978	first strand
Strand 2	A	981	988	anti-parallel
Strand 3	A	1004	1013	anti-parallel
Strand 4	A	1016	1022	anti-parallel
Strand 5	A	1179	1184	anti-parallel
Strand 6	A	1149	1154	anti-parallel
Strand 7	A	1137	1143	anti-parallel
Strand 8	A	1097	1102	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1050	1055	first strand
Strand 2	A	1060	1065	anti-parallel
Strand 3	A	1071	1074	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1083	first strand
Strand 2	A	1086	1092	anti-parallel
Strand 3	A	1169	1174	anti-parallel
Strand 4	A	1160	1165	anti-parallel
Strand 5	A	1116	1120	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1519	1520	first strand
Strand 2	A	1488	1490	parallel
Strand 3	A	1474	1476	parallel
Strand 4	A	1383	1386	parallel
Strand 5	A	1278	1283	parallel
Strand 6	A	1242	1245	parallel
Strand 7	A	1214	1215	parallel
Strand 8	A	1549	1550	parallel
Strand 9	A	1522	1523	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1287	1288	first strand
Strand 2	A	1347	1348	anti-parallel
Strand 3	A	1318	1319	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1434	1436	first strand
Strand 2	A	1442	1444	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1601	1602	first strand
Strand 2	A	1621	1623	anti-parallel
Strand 3	A	1627	1630	anti-parallel
Strand 4	A	1675	1679	anti-parallel
Strand 5	A	1649	1651	anti-parallel
Strand 6	A	1657	1658	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1639	1644	first strand
Strand 2	A	1663	1668	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1682	1687	first strand
Strand 2	A	1701	1706	anti-parallel
Strand 3	A	1763	1769	parallel
Strand 4	A	1800	1804	anti-parallel
Strand 5	A	1791	1795	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1713	1719	first strand
Strand 2	A	1734	1741	anti-parallel
Strand 3	A	1744	1752	anti-parallel
Strand 4	A	1815	1822	anti-parallel
Strand 5	A	1776	1783	anti-parallel
Strand 6	A	1786	1788	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KZ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZ7