Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KZ9 entry

There are 29 chains in PDB entry 9KZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	GLY 754
B	THR 2	GLY 733
C	SER 2	TYR 81
D	THR 4	GLY 141
E	VAL 2	VAL 61
F	ASP 28	ARG 188
I	MET 1	ASP 33
J	MET 1	MET 42
L	SER 2	LEU 152
M	MET 1	GLN 30
O	LYS 29	ALA 123
K	VAL 10	LEU 86
s	ALA 99	ALA 252
c	ASP 43	PHE 212
a	GLU 42	PRO 213
b	ALA 29	VAL 206
h	PHE 64	TYR 225
m	ALA 37	PHE 210
e	LEU 36	PHE 205
l	ASP 37	ASN 211
k	LEU 35	ALA 223
f	ALA 37	PHE 210
i	ASP 39	PHE 218
j	ALA 37	ASN 209
d	MET 38	SER 212
g	ALA 37	CYS 252
R	TYR 41	LYS 130
n	LEU 38	LEU 218
Q	ALA 89	ASN 231

There are223 helices in PDB entry 9KZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	45	55	Right-handed alpha
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	65	98	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	151	Right-handed alpha
Helix 8	AA8	A	155	183	Right-handed alpha
Helix 9	AA9	A	187	194	Right-handed alpha
Helix 10	AB1	A	195	206	Right-handed alpha
Helix 11	AB2	A	207	222	Right-handed alpha
Helix 12	AB3	A	222	232	Right-handed alpha
Helix 13	AB4	A	241	248	Right-handed alpha
Helix 14	AB5	A	248	256	Right-handed alpha
Helix 15	AB6	A	257	262	Right-handed 310
Helix 16	AB7	A	263	268	Right-handed alpha
Helix 17	AB8	A	270	277	Right-handed 310
Helix 18	AB9	A	292	311	Right-handed alpha
Helix 19	AC1	A	323	331	Right-handed alpha
Helix 20	AC2	A	342	350	Right-handed alpha
Helix 21	AC3	A	350	376	Right-handed alpha
Helix 22	AC4	A	385	418	Right-handed alpha
Helix 23	AC5	A	427	435	Right-handed alpha
Helix 24	AC6	A	435	467	Right-handed alpha
Helix 25	AC7	A	469	473	Right-handed 310
Helix 26	AC8	A	483	496	Right-handed alpha
Helix 27	AC9	A	509	513	Right-handed 310
Helix 28	AD1	A	531	558	Right-handed alpha
Helix 29	AD2	A	567	572	Right-handed alpha
Helix 30	AD3	A	589	620	Right-handed alpha
Helix 31	AD4	A	626	628	Right-handed 310
Helix 32	AD5	A	637	642	Right-handed alpha
Helix 33	AD6	A	644	652	Right-handed alpha
Helix 34	AD7	A	652	657	Right-handed alpha
Helix 35	AD8	A	657	662	Right-handed alpha
Helix 36	AD9	A	668	691	Right-handed alpha
Helix 37	AE1	A	692	710	Right-handed alpha
Helix 38	AE2	A	722	754	Right-handed alpha
Helix 39	AE3	B	8	13	Right-handed alpha
Helix 40	AE4	B	17	26	Right-handed alpha
Helix 41	AE5	B	29	33	Right-handed 310
Helix 42	AE6	B	37	71	Right-handed alpha
Helix 43	AE7	B	72	79	Right-handed alpha
Helix 44	AE8	B	96	103	Right-handed alpha
Helix 45	AE9	B	118	126	Right-handed alpha
Helix 46	AF1	B	131	155	Right-handed alpha
Helix 47	AF2	B	163	168	Right-handed alpha
Helix 48	AF3	B	169	180	Right-handed alpha
Helix 49	AF4	B	182	196	Right-handed alpha
Helix 50	AF5	B	196	202	Right-handed alpha
Helix 51	AF6	B	221	227	Right-handed alpha
Helix 52	AF7	B	228	234	Right-handed 310
Helix 53	AF8	B	268	287	Right-handed alpha
Helix 54	AF9	B	299	307	Right-handed alpha
Helix 55	AG1	B	320	328	Right-handed alpha
Helix 56	AG2	B	328	354	Right-handed alpha
Helix 57	AG3	B	363	396	Right-handed alpha
Helix 58	AG4	B	399	403	Right-handed 310
Helix 59	AG5	B	405	413	Right-handed alpha
Helix 60	AG6	B	413	445	Right-handed alpha
Helix 61	AG7	B	447	451	Right-handed 310
Helix 62	AG8	B	456	466	Right-handed alpha
Helix 63	AG9	B	475	479	Right-handed 310
Helix 64	AH1	B	482	488	Right-handed alpha
Helix 65	AH2	B	492	501	Right-handed alpha
Helix 66	AH3	B	512	539	Right-handed alpha
Helix 67	AH4	B	548	553	Right-handed 310
Helix 68	AH5	B	570	602	Right-handed alpha
Helix 69	AH6	B	604	612	Right-handed alpha
Helix 70	AH7	B	614	622	Right-handed alpha
Helix 71	AH8	B	622	627	Right-handed alpha
Helix 72	AH9	B	627	632	Right-handed alpha
Helix 73	AI1	B	642	665	Right-handed alpha
Helix 74	AI2	B	666	684	Right-handed alpha
Helix 75	AI3	B	700	733	Right-handed alpha
Helix 76	AI4	C	15	21	Right-handed alpha
Helix 77	AI5	C	44	48	Right-handed 310
Helix 78	AI6	C	52	58	Right-handed alpha
Helix 79	AI7	D	22	28	Right-handed alpha
Helix 80	AI8	D	64	80	Right-handed alpha
Helix 81	AI9	D	122	126	Right-handed 310
Helix 82	AJ1	E	54	56	Right-handed 310
Helix 83	AJ2	F	28	32	Right-handed 310
Helix 84	AJ3	F	38	57	Right-handed alpha
Helix 85	AJ4	F	63	85	Right-handed alpha
Helix 86	AJ5	F	103	107	Right-handed 310
Helix 87	AJ6	F	110	136	Right-handed alpha
Helix 88	AJ7	F	140	147	Right-handed alpha
Helix 89	AJ8	F	149	160	Right-handed alpha
Helix 90	AJ9	F	162	173	Right-handed alpha
Helix 91	AK1	F	179	183	Right-handed 310
Helix 92	AK2	I	4	32	Right-handed alpha
Helix 93	AK3	J	2	10	Right-handed alpha
Helix 94	AK4	J	11	34	Right-handed alpha
Helix 95	AK5	L	9	11	Right-handed 310
Helix 96	AK6	L	19	24	Right-handed alpha
Helix 97	AK7	L	24	34	Right-handed alpha
Helix 98	AK8	L	42	66	Right-handed alpha
Helix 99	AK9	L	73	101	Right-handed alpha
Helix 100	AL1	L	112	141	Right-handed alpha
Helix 101	AL2	L	141	146	Right-handed alpha
Helix 102	AL3	L	148	152	Right-handed 310
Helix 103	AL4	M	3	29	Right-handed alpha
Helix 104	AL5	O	41	55	Right-handed alpha
Helix 105	AL6	O	56	59	Right-handed 310
Helix 106	AL7	O	70	84	Right-handed alpha
Helix 107	AL8	O	95	121	Right-handed alpha
Helix 108	AL9	K	17	39	Right-handed alpha
Helix 109	AM1	K	58	83	Right-handed alpha
Helix 110	AM2	s	106	110	Right-handed 310
Helix 111	AM3	s	137	142	Right-handed alpha
Helix 112	AM4	s	143	163	Right-handed alpha
Helix 113	AM5	s	179	183	Right-handed 310
Helix 114	AM6	s	196	201	Right-handed alpha
Helix 115	AM7	s	203	207	Right-handed 310
Helix 116	AM8	s	217	220	Right-handed 310
Helix 117	AM9	s	241	251	Right-handed alpha
Helix 118	AN1	c	71	76	Right-handed alpha
Helix 119	AN2	c	77	105	Right-handed alpha
Helix 120	AN3	c	114	126	Right-handed alpha
Helix 121	AN4	c	126	151	Right-handed alpha
Helix 122	AN5	c	169	202	Right-handed alpha
Helix 123	AN6	c	204	211	Right-handed alpha
Helix 124	AN7	a	70	75	Right-handed alpha
Helix 125	AN8	a	76	104	Right-handed alpha
Helix 126	AN9	a	106	110	Right-handed 310
Helix 127	AO1	a	115	123	Right-handed alpha
Helix 128	AO2	a	124	149	Right-handed alpha
Helix 129	AO3	a	166	199	Right-handed alpha
Helix 130	AO4	a	201	209	Right-handed alpha
Helix 131	AO5	b	57	62	Right-handed alpha
Helix 132	AO6	b	63	90	Right-handed alpha
Helix 133	AO7	b	95	99	Right-handed 310
Helix 134	AO8	b	102	110	Right-handed alpha
Helix 135	AO9	b	111	130	Right-handed alpha
Helix 136	AP1	b	162	193	Right-handed alpha
Helix 137	AP2	b	195	202	Right-handed alpha
Helix 138	AP3	h	64	68	Right-handed 310
Helix 139	AP4	h	72	99	Right-handed alpha
Helix 140	AP5	h	110	115	Right-handed alpha
Helix 141	AP6	h	116	119	Right-handed 310
Helix 142	AP7	h	129	152	Right-handed alpha
Helix 143	AP8	h	183	207	Right-handed alpha
Helix 144	AP9	h	211	220	Right-handed alpha
Helix 145	AQ1	m	65	69	Right-handed 310
Helix 146	AQ2	m	71	99	Right-handed alpha
Helix 147	AQ3	m	103	109	Right-handed alpha
Helix 148	AQ4	m	114	123	Right-handed alpha
Helix 149	AQ5	m	124	150	Right-handed alpha
Helix 150	AQ6	m	167	200	Right-handed alpha
Helix 151	AQ7	m	202	209	Right-handed alpha
Helix 152	AQ8	e	67	91	Right-handed alpha
Helix 153	AQ9	e	92	94	Right-handed 310
Helix 154	AR1	e	107	112	Right-handed 310
Helix 155	AR2	e	114	133	Right-handed alpha
Helix 156	AR3	e	162	189	Right-handed alpha
Helix 157	AR4	e	191	198	Right-handed alpha
Helix 158	AR5	l	63	67	Right-handed 310
Helix 159	AR6	l	69	94	Right-handed alpha
Helix 160	AR7	l	109	115	Right-handed 310
Helix 161	AR8	l	116	135	Right-handed alpha
Helix 162	AR9	l	164	197	Right-handed alpha
Helix 163	AS1	l	199	205	Right-handed alpha
Helix 164	AS2	k	72	76	Right-handed 310
Helix 165	AS3	k	78	106	Right-handed alpha
Helix 166	AS4	k	110	115	Right-handed alpha
Helix 167	AS5	k	120	134	Right-handed alpha
Helix 168	AS6	k	139	163	Right-handed alpha
Helix 169	AS7	k	184	215	Right-handed alpha
Helix 170	AS8	k	217	223	Right-handed alpha
Helix 171	AS9	f	65	70	Right-handed alpha
Helix 172	AT1	f	71	99	Right-handed alpha
Helix 173	AT2	f	103	109	Right-handed alpha
Helix 174	AT3	f	113	124	Right-handed alpha
Helix 175	AT4	f	124	149	Right-handed alpha
Helix 176	AT5	f	167	200	Right-handed alpha
Helix 177	AT6	f	202	209	Right-handed alpha
Helix 178	AT7	i	67	72	Right-handed alpha
Helix 179	AT8	i	73	101	Right-handed alpha
Helix 180	AT9	i	112	120	Right-handed alpha
Helix 181	AU1	i	121	140	Right-handed alpha
Helix 182	AU2	i	145	150	Right-handed alpha
Helix 183	AU3	i	169	202	Right-handed alpha
Helix 184	AU4	i	204	211	Right-handed alpha
Helix 185	AU5	j	65	69	Right-handed 310
Helix 186	AU6	j	71	99	Right-handed alpha
Helix 187	AU7	j	103	109	Right-handed alpha
Helix 188	AU8	j	114	123	Right-handed alpha
Helix 189	AU9	j	124	148	Right-handed alpha
Helix 190	AV1	j	167	200	Right-handed alpha
Helix 191	AV2	j	202	208	Right-handed alpha
Helix 192	AV3	d	67	71	Right-handed 310
Helix 193	AV4	d	73	101	Right-handed alpha
Helix 194	AV5	d	117	126	Right-handed alpha
Helix 195	AV6	d	127	153	Right-handed alpha
Helix 196	AV7	d	172	203	Right-handed alpha
Helix 197	AV8	d	205	212	Right-handed alpha
Helix 198	AV9	g	65	69	Right-handed 310
Helix 199	AW1	g	73	103	Right-handed alpha
Helix 200	AW2	g	107	113	Right-handed alpha
Helix 201	AW3	g	118	127	Right-handed alpha
Helix 202	AW4	g	136	162	Right-handed alpha
Helix 203	AW5	g	177	181	Right-handed 310
Helix 204	AW6	g	183	185	Right-handed 310
Helix 205	AW7	g	186	213	Right-handed alpha
Helix 206	AW8	g	215	222	Right-handed alpha
Helix 207	AW9	g	237	245	Right-handed 310
Helix 208	AX1	R	61	69	Right-handed 310
Helix 209	AX2	R	72	95	Right-handed alpha
Helix 210	AX3	R	102	109	Right-handed alpha
Helix 211	AX4	R	110	127	Right-handed alpha
Helix 212	AX5	n	75	79	Right-handed 310
Helix 213	AX6	n	81	109	Right-handed alpha
Helix 214	AX7	n	114	119	Right-handed alpha
Helix 215	AX8	n	124	136	Right-handed alpha
Helix 216	AX9	n	136	152	Right-handed alpha
Helix 217	AY1	n	152	163	Right-handed alpha
Helix 218	AY2	n	188	214	Right-handed alpha
Helix 219	AY3	Q	91	123	Right-handed alpha
Helix 220	AY4	Q	130	158	Right-handed alpha
Helix 221	AY5	Q	180	185	Right-handed 310
Helix 222	AY6	Q	186	207	Right-handed alpha
Helix 223	AY7	Q	208	231	Right-handed alpha

There are 15 sheets in PDB entry 9KZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	519	first strand
Strand 2	A	522	525	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	624	first strand
Strand 2	A	630	632	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	638	639	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	118	119	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	62	first strand
Strand 2	D	30	37	anti-parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	95	99	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	50	53	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	21	27	anti-parallel
Strand 4	E	7	10	anti-parallel
Strand 5	E	58	60	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	89	90	anti-parallel
Strand 3	F	96	97	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	17	18	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	166	169	first strand
Strand 2	s	175	178	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	210	211	first strand
Strand 2	s	214	215	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	222	223	first strand
Strand 2	b	91	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZ9